Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18880

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18870 and CSW01_18875 are separated by 137 nucleotidesCSW01_18875 and CSW01_18880 are separated by 206 nucleotidesCSW01_18880 and CSW01_18885 are separated by 166 nucleotides CSW01_18870: CSW01_18870 - transcriptional regulator, at 897,919 to 898,164 _18870 CSW01_18875: CSW01_18875 - SM-20 protein, at 898,302 to 898,919 _18875 CSW01_18880: CSW01_18880 - hypothetical protein, at 899,126 to 899,446 _18880 CSW01_18885: CSW01_18885 - helix-turn-helix transcriptional regulator, at 899,613 to 900,287 _18885 Position (kb) 899 900Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 898.181 kb on - strandat 898.186 kb on - strandat 898.186 kb on - strandat 898.206 kb on + strandat 898.206 kb on + strandat 898.251 kb on + strandat 898.270 kb on - strandat 898.317 kb on - strandat 898.319 kb on + strandat 898.360 kb on + strandat 898.522 kb on + strand, within CSW01_18875at 898.569 kb on + strand, within CSW01_18875at 898.577 kb on + strand, within CSW01_18875at 898.592 kb on - strand, within CSW01_18875at 898.624 kb on + strand, within CSW01_18875at 898.658 kb on + strand, within CSW01_18875at 898.663 kb on + strand, within CSW01_18875at 898.671 kb on - strand, within CSW01_18875at 898.692 kb on + strand, within CSW01_18875at 898.700 kb on - strand, within CSW01_18875at 898.700 kb on - strand, within CSW01_18875at 898.817 kb on + strand, within CSW01_18875at 898.817 kb on + strand, within CSW01_18875at 898.824 kb on + strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.825 kb on - strand, within CSW01_18875at 898.840 kb on - strand, within CSW01_18875at 899.146 kb on - strandat 899.263 kb on + strand, within CSW01_18880at 899.263 kb on + strand, within CSW01_18880at 899.271 kb on - strand, within CSW01_18880at 899.279 kb on - strand, within CSW01_18880at 899.324 kb on - strand, within CSW01_18880at 899.400 kb on - strand, within CSW01_18880at 899.424 kb on + strandat 899.459 kb on - strandat 899.460 kb on - strandat 899.460 kb on - strandat 899.465 kb on + strandat 899.528 kb on + strandat 899.532 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.542 kb on + strandat 899.560 kb on - strandat 899.560 kb on - strandat 899.598 kb on + strandat 899.598 kb on + strandat 899.598 kb on + strandat 899.606 kb on - strandat 899.606 kb on - strandat 899.650 kb on + strandat 899.655 kb on + strandat 899.655 kb on + strandat 899.720 kb on - strand, within CSW01_18885at 899.739 kb on + strand, within CSW01_18885at 899.832 kb on + strand, within CSW01_18885at 899.840 kb on - strand, within CSW01_18885at 899.845 kb on - strand, within CSW01_18885at 899.854 kb on + strand, within CSW01_18885at 899.882 kb on + strand, within CSW01_18885at 899.890 kb on - strand, within CSW01_18885at 899.890 kb on - strand, within CSW01_18885at 899.926 kb on + strand, within CSW01_18885at 899.926 kb on + strand, within CSW01_18885at 899.926 kb on + strand, within CSW01_18885at 899.934 kb on - strand, within CSW01_18885at 899.934 kb on - strand, within CSW01_18885at 899.934 kb on - strand, within CSW01_18885at 899.934 kb on - strand, within CSW01_18885at 899.934 kb on - strand, within CSW01_18885at 899.944 kb on - strand, within CSW01_18885at 899.944 kb on - strand, within CSW01_18885at 900.027 kb on - strand, within CSW01_18885at 900.046 kb on + strand, within CSW01_18885at 900.049 kb on + strand, within CSW01_18885at 900.054 kb on - strand, within CSW01_18885at 900.054 kb on - strand, within CSW01_18885at 900.057 kb on - strand, within CSW01_18885at 900.057 kb on - strand, within CSW01_18885at 900.057 kb on - strand, within CSW01_18885at 900.086 kb on - strand, within CSW01_18885at 900.152 kb on + strand, within CSW01_18885at 900.160 kb on - strand, within CSW01_18885at 900.200 kb on + strand, within CSW01_18885at 900.262 kb on - strandat 900.294 kb on + strandat 900.294 kb on + strandat 900.297 kb on + strandat 900.302 kb on - strandat 900.304 kb on + strandat 900.304 kb on + strandat 900.304 kb on + strandat 900.304 kb on + strandat 900.304 kb on + strandat 900.304 kb on - strandat 900.304 kb on - strandat 900.304 kb on - strandat 900.304 kb on - strandat 900.307 kb on - strandat 900.310 kb on + strandat 900.310 kb on + strandat 900.312 kb on - strandat 900.312 kb on - strandat 900.312 kb on - strandat 900.312 kb on - strandat 900.312 kb on - strandat 900.319 kb on + strandat 900.319 kb on + strandat 900.319 kb on + strandat 900.319 kb on + strandat 900.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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898,181 - -1.9
898,186 - -2.5
898,186 - +0.9
898,206 + +0.5
898,206 + -0.2
898,251 + +0.9
898,270 - +0.8
898,317 - +1.0
898,319 + +0.3
898,360 + +0.8
898,522 + CSW01_18875 0.36 -3.9
898,569 + CSW01_18875 0.43 -0.3
898,577 + CSW01_18875 0.44 -2.8
898,592 - CSW01_18875 0.47 +0.2
898,624 + CSW01_18875 0.52 +0.3
898,658 + CSW01_18875 0.58 +0.6
898,663 + CSW01_18875 0.58 +0.1
898,671 - CSW01_18875 0.60 +0.7
898,692 + CSW01_18875 0.63 +0.7
898,700 - CSW01_18875 0.64 +0.8
898,700 - CSW01_18875 0.64 -0.7
898,817 + CSW01_18875 0.83 +0.9
898,817 + CSW01_18875 0.83 -1.5
898,824 + CSW01_18875 0.84 +0.0
898,825 - CSW01_18875 0.85 -1.7
898,825 - CSW01_18875 0.85 +0.3
898,825 - CSW01_18875 0.85 -2.4
898,840 - CSW01_18875 0.87 -0.5
899,146 - -0.2
899,263 + CSW01_18880 0.43 -2.8
899,263 + CSW01_18880 0.43 -0.5
899,271 - CSW01_18880 0.45 +1.7
899,279 - CSW01_18880 0.48 +0.8
899,324 - CSW01_18880 0.62 +1.3
899,400 - CSW01_18880 0.85 -0.3
899,424 + -0.7
899,459 - +1.8
899,460 - -0.0
899,460 - -2.2
899,465 + -0.9
899,528 + +0.1
899,532 + +0.8
899,542 + +1.4
899,542 + -0.7
899,542 + -0.2
899,542 + +0.6
899,560 - +0.8
899,560 - +0.2
899,598 + +0.9
899,598 + +0.7
899,598 + +1.2
899,606 - -0.9
899,606 - -2.7
899,650 + -0.2
899,655 + -0.2
899,655 + +1.0
899,720 - CSW01_18885 0.16 +1.2
899,739 + CSW01_18885 0.19 -1.4
899,832 + CSW01_18885 0.32 -2.3
899,840 - CSW01_18885 0.34 +0.3
899,845 - CSW01_18885 0.34 +1.1
899,854 + CSW01_18885 0.36 -1.7
899,882 + CSW01_18885 0.40 -0.5
899,890 - CSW01_18885 0.41 +1.1
899,890 - CSW01_18885 0.41 -1.0
899,926 + CSW01_18885 0.46 +0.5
899,926 + CSW01_18885 0.46 -0.4
899,926 + CSW01_18885 0.46 +1.6
899,934 - CSW01_18885 0.48 -1.5
899,934 - CSW01_18885 0.48 +1.0
899,934 - CSW01_18885 0.48 -1.7
899,934 - CSW01_18885 0.48 -2.1
899,934 - CSW01_18885 0.48 +0.4
899,944 - CSW01_18885 0.49 -2.5
899,944 - CSW01_18885 0.49 +1.3
900,027 - CSW01_18885 0.61 -1.7
900,046 + CSW01_18885 0.64 -1.9
900,049 + CSW01_18885 0.65 -2.5
900,054 - CSW01_18885 0.65 -3.3
900,054 - CSW01_18885 0.65 -0.1
900,057 - CSW01_18885 0.66 -2.6
900,057 - CSW01_18885 0.66 -0.6
900,057 - CSW01_18885 0.66 -0.3
900,086 - CSW01_18885 0.70 -1.1
900,152 + CSW01_18885 0.80 +1.2
900,160 - CSW01_18885 0.81 +1.4
900,200 + CSW01_18885 0.87 +1.1
900,262 - -0.1
900,294 + +0.7
900,294 + +0.8
900,297 + +1.4
900,302 - +0.4
900,304 + -2.3
900,304 + -0.5
900,304 + -0.1
900,304 + +0.2
900,304 + -2.4
900,304 - +1.1
900,304 - +1.3
900,304 - -0.5
900,304 - +1.4
900,307 - +1.5
900,310 + -1.4
900,310 + -0.5
900,312 - -3.4
900,312 - -2.5
900,312 - -1.1
900,312 - -0.6
900,312 - -1.2
900,319 + -1.6
900,319 + -0.2
900,319 + -0.7
900,319 + -2.0
900,352 - -0.4

Or see this region's nucleotide sequence