Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18845

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18835 and CSW01_18840 are separated by 83 nucleotidesCSW01_18840 and CSW01_18845 are separated by 322 nucleotidesCSW01_18845 and CSW01_18850 are separated by 11 nucleotides CSW01_18835: CSW01_18835 - acyl-CoA thioesterase, at 890,471 to 890,959 _18835 CSW01_18840: CSW01_18840 - hypothetical protein, at 891,043 to 891,321 _18840 CSW01_18845: CSW01_18845 - maltose ABC transporter permease, at 891,644 to 892,534 _18845 CSW01_18850: CSW01_18850 - maltose ABC transporter permease MalF, at 892,546 to 894,120 _18850 Position (kb) 891 892 893Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 890.750 kb on + strand, within CSW01_18835at 890.780 kb on + strand, within CSW01_18835at 890.961 kb on + strandat 890.981 kb on - strandat 891.053 kb on + strandat 891.109 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.120 kb on + strand, within CSW01_18840at 891.128 kb on - strand, within CSW01_18840at 891.144 kb on + strand, within CSW01_18840at 891.301 kb on + strandat 891.301 kb on + strandat 891.309 kb on - strandat 891.309 kb on - strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.334 kb on + strandat 891.342 kb on - strandat 891.450 kb on + strandat 891.458 kb on - strandat 891.506 kb on + strandat 891.681 kb on + strandat 891.689 kb on - strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.723 kb on + strandat 891.731 kb on - strandat 891.731 kb on - strandat 891.804 kb on - strand, within CSW01_18845at 891.837 kb on - strand, within CSW01_18845at 891.924 kb on - strand, within CSW01_18845at 891.929 kb on - strand, within CSW01_18845at 891.948 kb on - strand, within CSW01_18845at 891.950 kb on + strand, within CSW01_18845at 891.958 kb on - strand, within CSW01_18845at 892.029 kb on - strand, within CSW01_18845at 892.088 kb on - strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.090 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.127 kb on + strand, within CSW01_18845at 892.135 kb on - strand, within CSW01_18845at 892.216 kb on - strand, within CSW01_18845at 892.363 kb on + strand, within CSW01_18845at 892.512 kb on + strandat 892.568 kb on - strandat 892.569 kb on + strandat 892.584 kb on + strandat 892.638 kb on - strandat 892.685 kb on - strandat 892.685 kb on - strandat 892.687 kb on - strandat 892.693 kb on - strandat 892.708 kb on - strand, within CSW01_18850at 892.708 kb on - strand, within CSW01_18850at 892.886 kb on + strand, within CSW01_18850at 892.923 kb on - strand, within CSW01_18850at 893.001 kb on - strand, within CSW01_18850at 893.033 kb on + strand, within CSW01_18850at 893.104 kb on + strand, within CSW01_18850at 893.122 kb on - strand, within CSW01_18850at 893.133 kb on - strand, within CSW01_18850at 893.146 kb on - strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.172 kb on + strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.180 kb on - strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.182 kb on + strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.190 kb on - strand, within CSW01_18850at 893.341 kb on - strand, within CSW01_18850at 893.436 kb on + strand, within CSW01_18850at 893.458 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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890,750 + CSW01_18835 0.57 +0.7
890,780 + CSW01_18835 0.63 -2.6
890,961 + -0.5
890,981 - -3.5
891,053 + -2.7
891,109 + CSW01_18840 0.24 -0.4
891,120 + CSW01_18840 0.28 -0.5
891,120 + CSW01_18840 0.28 +1.0
891,120 + CSW01_18840 0.28 -0.5
891,128 - CSW01_18840 0.30 +1.1
891,144 + CSW01_18840 0.36 -0.5
891,301 + -0.3
891,301 + -1.0
891,309 - -0.6
891,309 - -0.4
891,334 + +0.3
891,334 + +0.7
891,334 + -0.4
891,334 + -1.6
891,334 + +1.5
891,334 + +0.9
891,342 - -0.3
891,450 + +2.2
891,458 - +0.1
891,506 + -1.8
891,681 + +0.2
891,689 - -1.7
891,723 + -1.4
891,723 + -1.0
891,723 + +1.6
891,731 - +1.3
891,731 - +0.6
891,804 - CSW01_18845 0.18 +0.6
891,837 - CSW01_18845 0.22 +1.0
891,924 - CSW01_18845 0.31 -0.3
891,929 - CSW01_18845 0.32 +0.1
891,948 - CSW01_18845 0.34 +0.5
891,950 + CSW01_18845 0.34 -1.5
891,958 - CSW01_18845 0.35 +0.8
892,029 - CSW01_18845 0.43 -3.8
892,088 - CSW01_18845 0.50 -0.6
892,090 + CSW01_18845 0.50 +1.1
892,090 + CSW01_18845 0.50 +0.3
892,090 + CSW01_18845 0.50 -1.7
892,127 + CSW01_18845 0.54 -1.9
892,127 + CSW01_18845 0.54 -2.1
892,135 - CSW01_18845 0.55 -1.2
892,216 - CSW01_18845 0.64 +0.1
892,363 + CSW01_18845 0.81 -1.3
892,512 + -0.2
892,568 - -0.9
892,569 + +1.2
892,584 + -3.2
892,638 - +1.3
892,685 - -2.8
892,685 - +1.3
892,687 - +0.5
892,693 - +0.3
892,708 - CSW01_18850 0.10 -2.9
892,708 - CSW01_18850 0.10 +1.6
892,886 + CSW01_18850 0.22 +0.7
892,923 - CSW01_18850 0.24 +1.7
893,001 - CSW01_18850 0.29 -0.9
893,033 + CSW01_18850 0.31 +0.7
893,104 + CSW01_18850 0.35 -2.7
893,122 - CSW01_18850 0.37 -1.7
893,133 - CSW01_18850 0.37 +0.9
893,146 - CSW01_18850 0.38 -0.3
893,172 + CSW01_18850 0.40 -1.1
893,172 + CSW01_18850 0.40 +1.0
893,180 - CSW01_18850 0.40 -0.7
893,180 - CSW01_18850 0.40 +0.2
893,180 - CSW01_18850 0.40 +0.8
893,180 - CSW01_18850 0.40 -3.4
893,180 - CSW01_18850 0.40 +1.3
893,182 + CSW01_18850 0.40 +0.4
893,182 + CSW01_18850 0.40 -1.3
893,182 + CSW01_18850 0.40 -0.3
893,182 + CSW01_18850 0.40 +0.8
893,182 + CSW01_18850 0.40 -0.2
893,182 + CSW01_18850 0.40 -0.8
893,182 + CSW01_18850 0.40 +0.0
893,182 + CSW01_18850 0.40 -1.5
893,190 - CSW01_18850 0.41 -0.7
893,190 - CSW01_18850 0.41 -1.1
893,190 - CSW01_18850 0.41 -3.1
893,190 - CSW01_18850 0.41 +0.1
893,341 - CSW01_18850 0.50 -1.6
893,436 + CSW01_18850 0.57 -0.6
893,458 + CSW01_18850 0.58 +0.6
893,459 + CSW01_18850 0.58 +1.6
893,459 + CSW01_18850 0.58 -2.2
893,459 + CSW01_18850 0.58 +1.3
893,459 + CSW01_18850 0.58 -3.4
893,467 - CSW01_18850 0.58 -1.3
893,467 - CSW01_18850 0.58 +1.4
893,467 - CSW01_18850 0.58 -0.8
893,467 - CSW01_18850 0.58 +1.1

Or see this region's nucleotide sequence