Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18665

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18660 and CSW01_18665 are separated by 18 nucleotidesCSW01_18665 and CSW01_18670 are separated by 158 nucleotides CSW01_18660: CSW01_18660 - glycerate kinase, at 855,190 to 856,323 _18660 CSW01_18665: CSW01_18665 - permease, at 856,342 to 857,694 _18665 CSW01_18670: CSW01_18670 - CdaR family transcriptional regulator, at 857,853 to 858,992 _18670 Position (kb) 856 857 858Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 855.350 kb on - strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.375 kb on + strand, within CSW01_18660at 855.383 kb on - strand, within CSW01_18660at 855.453 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.508 kb on - strand, within CSW01_18660at 855.510 kb on - strand, within CSW01_18660at 855.593 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.603 kb on - strand, within CSW01_18660at 855.705 kb on + strand, within CSW01_18660at 855.747 kb on - strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.771 kb on + strand, within CSW01_18660at 855.917 kb on + strand, within CSW01_18660at 855.965 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.002 kb on + strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.010 kb on - strand, within CSW01_18660at 856.030 kb on - strand, within CSW01_18660at 856.040 kb on + strand, within CSW01_18660at 856.185 kb on + strand, within CSW01_18660at 856.229 kb on + strandat 856.357 kb on + strandat 856.357 kb on + strandat 856.365 kb on + strandat 856.365 kb on + strandat 856.395 kb on + strandat 856.431 kb on + strandat 856.534 kb on - strand, within CSW01_18665at 856.584 kb on + strand, within CSW01_18665at 856.600 kb on - strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.705 kb on + strand, within CSW01_18665at 856.726 kb on - strand, within CSW01_18665at 856.867 kb on - strand, within CSW01_18665at 856.902 kb on + strand, within CSW01_18665at 856.961 kb on - strand, within CSW01_18665at 857.013 kb on - strand, within CSW01_18665at 857.039 kb on - strand, within CSW01_18665at 857.040 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.159 kb on - strand, within CSW01_18665at 857.214 kb on + strand, within CSW01_18665at 857.244 kb on - strand, within CSW01_18665at 857.256 kb on - strand, within CSW01_18665at 857.273 kb on + strand, within CSW01_18665at 857.283 kb on + strand, within CSW01_18665at 857.451 kb on - strand, within CSW01_18665at 857.527 kb on + strand, within CSW01_18665at 857.535 kb on - strand, within CSW01_18665at 857.622 kb on + strandat 857.627 kb on + strandat 857.627 kb on + strandat 857.635 kb on - strandat 857.652 kb on - strandat 857.676 kb on + strandat 857.827 kb on + strandat 857.837 kb on + strandat 857.958 kb on - strandat 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.109 kb on + strand, within CSW01_18670at 858.188 kb on + strand, within CSW01_18670at 858.201 kb on - strand, within CSW01_18670at 858.278 kb on - strand, within CSW01_18670at 858.292 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.356 kb on + strand, within CSW01_18670at 858.375 kb on - strand, within CSW01_18670at 858.458 kb on + strand, within CSW01_18670at 858.498 kb on + strand, within CSW01_18670at 858.508 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.574 kb on + strand, within CSW01_18670at 858.631 kb on + strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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855,350 - CSW01_18660 0.14 -0.2
855,375 + CSW01_18660 0.16 -2.5
855,375 + CSW01_18660 0.16 -0.1
855,383 - CSW01_18660 0.17 +1.4
855,453 - CSW01_18660 0.23 +1.0
855,508 - CSW01_18660 0.28 +0.7
855,508 - CSW01_18660 0.28 +0.8
855,510 - CSW01_18660 0.28 +1.0
855,593 - CSW01_18660 0.36 +1.1
855,603 - CSW01_18660 0.36 +1.4
855,603 - CSW01_18660 0.36 -0.9
855,705 + CSW01_18660 0.45 +2.1
855,747 - CSW01_18660 0.49 +1.4
855,771 + CSW01_18660 0.51 -0.3
855,771 + CSW01_18660 0.51 -0.7
855,771 + CSW01_18660 0.51 +0.4
855,917 + CSW01_18660 0.64 -0.3
855,965 + CSW01_18660 0.68 -0.8
856,002 + CSW01_18660 0.72 +0.0
856,002 + CSW01_18660 0.72 -3.2
856,002 + CSW01_18660 0.72 +3.1
856,002 + CSW01_18660 0.72 -0.5
856,010 - CSW01_18660 0.72 +3.9
856,010 - CSW01_18660 0.72 -0.3
856,010 - CSW01_18660 0.72 +1.2
856,010 - CSW01_18660 0.72 -2.7
856,010 - CSW01_18660 0.72 +1.6
856,030 - CSW01_18660 0.74 -0.8
856,040 + CSW01_18660 0.75 +0.1
856,185 + CSW01_18660 0.88 +0.1
856,229 + +0.8
856,357 + +1.3
856,357 + -2.1
856,365 + +1.4
856,365 + +0.6
856,395 + -1.0
856,431 + +1.4
856,534 - CSW01_18665 0.14 +2.0
856,584 + CSW01_18665 0.18 -0.2
856,600 - CSW01_18665 0.19 -2.8
856,705 + CSW01_18665 0.27 +1.3
856,705 + CSW01_18665 0.27 -0.6
856,726 - CSW01_18665 0.28 +0.2
856,867 - CSW01_18665 0.39 +0.3
856,902 + CSW01_18665 0.41 +1.2
856,961 - CSW01_18665 0.46 -2.4
857,013 - CSW01_18665 0.50 -0.1
857,039 - CSW01_18665 0.52 -3.4
857,040 - CSW01_18665 0.52 -0.5
857,121 - CSW01_18665 0.58 -3.3
857,121 - CSW01_18665 0.58 +1.4
857,159 - CSW01_18665 0.60 -2.2
857,214 + CSW01_18665 0.64 -2.5
857,244 - CSW01_18665 0.67 -1.6
857,256 - CSW01_18665 0.68 -2.5
857,273 + CSW01_18665 0.69 -2.7
857,283 + CSW01_18665 0.70 +0.3
857,451 - CSW01_18665 0.82 -1.8
857,527 + CSW01_18665 0.88 -1.6
857,535 - CSW01_18665 0.88 +0.7
857,622 + +0.4
857,627 + -4.3
857,627 + -1.8
857,635 - -2.5
857,652 - +1.2
857,676 + -1.8
857,827 + -0.5
857,837 + +0.2
857,958 - +0.6
858,052 + CSW01_18670 0.17 -2.9
858,052 + CSW01_18670 0.17 -1.0
858,052 + CSW01_18670 0.17 -2.8
858,052 + CSW01_18670 0.17 +0.8
858,052 + CSW01_18670 0.17 -0.3
858,052 + CSW01_18670 0.17 -0.7
858,052 + CSW01_18670 0.17 -0.3
858,052 + CSW01_18670 0.17 +2.7
858,060 - CSW01_18670 0.18 -1.1
858,060 - CSW01_18670 0.18 -0.8
858,060 - CSW01_18670 0.18 +0.8
858,060 - CSW01_18670 0.18 -1.1
858,060 - CSW01_18670 0.18 -1.5
858,060 - CSW01_18670 0.18 +0.5
858,109 + CSW01_18670 0.22 +1.2
858,188 + CSW01_18670 0.29 -1.1
858,201 - CSW01_18670 0.31 +1.0
858,278 - CSW01_18670 0.37 +2.5
858,292 + CSW01_18670 0.39 -0.6
858,350 + CSW01_18670 0.44 +2.3
858,350 + CSW01_18670 0.44 +1.6
858,350 + CSW01_18670 0.44 +2.1
858,356 + CSW01_18670 0.44 +0.7
858,375 - CSW01_18670 0.46 -2.1
858,458 + CSW01_18670 0.53 +0.2
858,498 + CSW01_18670 0.57 -1.9
858,508 - CSW01_18670 0.57 -0.4
858,523 - CSW01_18670 0.59 +1.2
858,523 - CSW01_18670 0.59 -0.8
858,574 + CSW01_18670 0.63 -2.1
858,631 + CSW01_18670 0.68 -0.6
858,644 - CSW01_18670 0.69 -1.8
858,644 - CSW01_18670 0.69 -0.9

Or see this region's nucleotide sequence