Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18475

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18465 and CSW01_18470 are separated by 240 nucleotidesCSW01_18470 and CSW01_18475 are separated by 530 nucleotidesCSW01_18475 and CSW01_18480 are separated by 234 nucleotides CSW01_18465: CSW01_18465 - outer membrane protein W, at 817,795 to 818,448 _18465 CSW01_18470: CSW01_18470 - hypothetical protein, at 818,689 to 818,871 _18470 CSW01_18475: CSW01_18475 - D-alanyl-D-alanine endopeptidase, at 819,402 to 820,352 _18475 CSW01_18480: CSW01_18480 - PLP-dependent aminotransferase family protein, at 820,587 to 822,008 _18480 Position (kb) 819 820 821Strain fitness (log2 ratio) -3 -2 -1 0 1at 818.404 kb on + strandat 818.404 kb on + strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.412 kb on - strandat 818.475 kb on + strandat 818.502 kb on - strandat 818.629 kb on - strandat 818.738 kb on + strand, within CSW01_18470at 818.829 kb on - strand, within CSW01_18470at 818.867 kb on + strandat 818.873 kb on - strandat 819.025 kb on - strandat 819.078 kb on + strandat 819.213 kb on + strandat 819.220 kb on - strandat 819.223 kb on - strandat 819.260 kb on - strandat 819.267 kb on + strandat 819.301 kb on - strandat 819.325 kb on + strandat 819.325 kb on + strandat 819.325 kb on + strandat 819.333 kb on - strandat 819.333 kb on - strandat 819.333 kb on - strandat 819.440 kb on - strandat 819.557 kb on - strand, within CSW01_18475at 819.757 kb on + strand, within CSW01_18475at 819.781 kb on + strand, within CSW01_18475at 819.789 kb on - strand, within CSW01_18475at 819.846 kb on - strand, within CSW01_18475at 819.846 kb on - strand, within CSW01_18475at 819.859 kb on - strand, within CSW01_18475at 820.137 kb on + strand, within CSW01_18475at 820.171 kb on - strand, within CSW01_18475at 820.171 kb on - strand, within CSW01_18475at 820.219 kb on - strand, within CSW01_18475at 820.265 kb on + strandat 820.273 kb on - strandat 820.320 kb on - strandat 820.382 kb on - strandat 820.513 kb on + strandat 820.559 kb on - strandat 820.726 kb on - strandat 820.926 kb on - strand, within CSW01_18480at 820.927 kb on + strand, within CSW01_18480at 820.969 kb on + strand, within CSW01_18480at 820.977 kb on - strand, within CSW01_18480at 821.222 kb on + strand, within CSW01_18480at 821.230 kb on - strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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818,404 + +0.2
818,404 + +0.9
818,412 - +1.2
818,412 - -1.4
818,412 - -1.2
818,412 - +0.5
818,475 + -3.5
818,502 - -0.5
818,629 - -0.2
818,738 + CSW01_18470 0.27 -2.4
818,829 - CSW01_18470 0.77 -0.6
818,867 + -1.1
818,873 - +0.1
819,025 - +1.4
819,078 + +0.8
819,213 + -0.3
819,220 - -0.2
819,223 - +0.0
819,260 - -2.0
819,267 + -0.1
819,301 - -0.8
819,325 + -0.3
819,325 + -0.5
819,325 + -3.5
819,333 - -1.3
819,333 - -2.0
819,333 - +1.0
819,440 - -2.5
819,557 - CSW01_18475 0.16 -1.4
819,757 + CSW01_18475 0.37 +1.6
819,781 + CSW01_18475 0.40 +0.1
819,789 - CSW01_18475 0.41 +0.7
819,846 - CSW01_18475 0.47 +0.2
819,846 - CSW01_18475 0.47 +1.3
819,859 - CSW01_18475 0.48 +1.2
820,137 + CSW01_18475 0.77 +0.8
820,171 - CSW01_18475 0.81 -1.9
820,171 - CSW01_18475 0.81 -2.7
820,219 - CSW01_18475 0.86 +1.0
820,265 + -0.0
820,273 - -0.3
820,320 - -1.0
820,382 - -2.0
820,513 + -1.7
820,559 - +1.3
820,726 - -1.5
820,926 - CSW01_18480 0.24 -0.3
820,927 + CSW01_18480 0.24 -2.1
820,969 + CSW01_18480 0.27 -1.4
820,977 - CSW01_18480 0.27 -3.2
821,222 + CSW01_18480 0.45 +0.1
821,230 - CSW01_18480 0.45 -1.2
821,280 + CSW01_18480 0.49 +0.7
821,280 + CSW01_18480 0.49 -0.8
821,288 - CSW01_18480 0.49 +1.3
821,288 - CSW01_18480 0.49 +0.1
821,288 - CSW01_18480 0.49 -0.0
821,288 - CSW01_18480 0.49 +1.6

Or see this region's nucleotide sequence