Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18225 and CSW01_18230 are separated by 187 nucleotides CSW01_18230 and CSW01_18235 are separated by 0 nucleotides
CSW01_18225: CSW01_18225 - aminopeptidase, at 756,914 to 758,419
_18225
CSW01_18230: CSW01_18230 - agmatinase, at 758,607 to 759,536
_18230
CSW01_18235: CSW01_18235 - arginine decarboxylase, at 759,537 to 761,501
_18235
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 757.655 kb on - strand, within CSW01_18225 at 757.786 kb on + strand, within CSW01_18225 at 757.795 kb on - strand, within CSW01_18225 at 757.844 kb on - strand, within CSW01_18225 at 757.855 kb on + strand, within CSW01_18225 at 757.893 kb on + strand, within CSW01_18225 at 757.992 kb on - strand, within CSW01_18225 at 758.034 kb on - strand, within CSW01_18225 at 758.088 kb on - strand, within CSW01_18225 at 758.181 kb on - strand, within CSW01_18225 at 758.591 kb on - strand at 758.595 kb on + strand at 758.648 kb on + strand at 758.656 kb on - strand at 758.728 kb on - strand, within CSW01_18230 at 758.743 kb on - strand, within CSW01_18230 at 758.789 kb on - strand, within CSW01_18230 at 758.814 kb on - strand, within CSW01_18230 at 758.857 kb on - strand, within CSW01_18230 at 758.916 kb on + strand, within CSW01_18230 at 758.949 kb on + strand, within CSW01_18230 at 759.007 kb on - strand, within CSW01_18230 at 759.033 kb on + strand, within CSW01_18230 at 759.039 kb on - strand, within CSW01_18230 at 759.039 kb on - strand, within CSW01_18230 at 759.159 kb on - strand, within CSW01_18230 at 759.159 kb on - strand, within CSW01_18230 at 759.382 kb on - strand, within CSW01_18230 at 759.408 kb on + strand, within CSW01_18230 at 759.462 kb on - strand at 759.491 kb on + strand at 759.491 kb on + strand at 759.569 kb on + strand at 759.695 kb on - strand at 759.806 kb on + strand, within CSW01_18235 at 759.850 kb on - strand, within CSW01_18235 at 759.867 kb on + strand, within CSW01_18235 at 759.939 kb on + strand, within CSW01_18235 at 759.949 kb on - strand, within CSW01_18235 at 759.976 kb on + strand, within CSW01_18235 at 760.038 kb on - strand, within CSW01_18235 at 760.040 kb on + strand, within CSW01_18235 at 760.066 kb on + strand, within CSW01_18235 at 760.136 kb on + strand, within CSW01_18235 at 760.144 kb on - strand, within CSW01_18235 at 760.158 kb on + strand, within CSW01_18235 at 760.163 kb on + strand, within CSW01_18235 at 760.269 kb on + strand, within CSW01_18235 at 760.279 kb on - strand, within CSW01_18235 at 760.281 kb on + strand, within CSW01_18235 at 760.281 kb on + strand, within CSW01_18235 at 760.281 kb on + strand, within CSW01_18235 at 760.289 kb on - strand, within CSW01_18235 at 760.460 kb on - strand, within CSW01_18235 at 760.503 kb on - strand, within CSW01_18235
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 757,655 - CSW01_18225 0.49 +1.7 757,786 + CSW01_18225 0.58 +1.7 757,795 - CSW01_18225 0.58 +0.8 757,844 - CSW01_18225 0.62 -0.7 757,855 + CSW01_18225 0.62 +2.5 757,893 + CSW01_18225 0.65 +1.2 757,992 - CSW01_18225 0.72 -0.1 758,034 - CSW01_18225 0.74 -2.3 758,088 - CSW01_18225 0.78 +2.9 758,181 - CSW01_18225 0.84 +0.6 758,591 - +1.8 758,595 + +0.7 758,648 + +0.2 758,656 - +2.5 758,728 - CSW01_18230 0.13 +0.2 758,743 - CSW01_18230 0.15 +1.8 758,789 - CSW01_18230 0.20 +0.6 758,814 - CSW01_18230 0.22 -1.3 758,857 - CSW01_18230 0.27 -0.3 758,916 + CSW01_18230 0.33 -1.5 758,949 + CSW01_18230 0.37 +0.4 759,007 - CSW01_18230 0.43 +3.0 759,033 + CSW01_18230 0.46 +0.3 759,039 - CSW01_18230 0.46 -0.9 759,039 - CSW01_18230 0.46 +0.8 759,159 - CSW01_18230 0.59 +0.5 759,159 - CSW01_18230 0.59 +1.7 759,382 - CSW01_18230 0.83 -2.3 759,408 + CSW01_18230 0.86 +0.1 759,462 - +1.4 759,491 + +0.8 759,491 + -0.8 759,569 + +1.1 759,695 - -1.5 759,806 + CSW01_18235 0.14 -0.9 759,850 - CSW01_18235 0.16 -0.3 759,867 + CSW01_18235 0.17 +1.4 759,939 + CSW01_18235 0.20 -1.4 759,949 - CSW01_18235 0.21 +1.8 759,976 + CSW01_18235 0.22 +1.2 760,038 - CSW01_18235 0.25 -0.9 760,040 + CSW01_18235 0.26 -1.4 760,066 + CSW01_18235 0.27 +1.5 760,136 + CSW01_18235 0.30 +0.6 760,144 - CSW01_18235 0.31 +2.5 760,158 + CSW01_18235 0.32 +0.2 760,163 + CSW01_18235 0.32 -2.6 760,269 + CSW01_18235 0.37 +1.9 760,279 - CSW01_18235 0.38 -0.3 760,281 + CSW01_18235 0.38 +0.3 760,281 + CSW01_18235 0.38 -2.9 760,281 + CSW01_18235 0.38 +1.6 760,289 - CSW01_18235 0.38 -0.0 760,460 - CSW01_18235 0.47 +1.1 760,503 - CSW01_18235 0.49 -2.9
Or see this region's nucleotide sequence