Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18130

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18125 and CSW01_18130 overlap by 8 nucleotidesCSW01_18130 and CSW01_18135 are separated by 112 nucleotidesCSW01_18135 and CSW01_18140 are separated by 0 nucleotides CSW01_18125: CSW01_18125 - integrase, at 732,582 to 733,961 _18125 CSW01_18130: CSW01_18130 - IS3 family transposase, at 733,954 to 735,131 _18130 CSW01_18135: CSW01_18135 - Rha family transcriptional regulator, at 735,244 to 735,726 _18135 CSW01_18140: CSW01_18140 - hypothetical protein, at 735,727 to 736,020 _18140 Position (kb) 733 734 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 733.001 kb on + strand, within CSW01_18125at 733.009 kb on - strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.211 kb on - strand, within CSW01_18125at 733.238 kb on - strand, within CSW01_18125at 733.254 kb on - strand, within CSW01_18125at 733.286 kb on + strand, within CSW01_18125at 733.291 kb on - strand, within CSW01_18125at 733.317 kb on - strand, within CSW01_18125at 733.361 kb on + strand, within CSW01_18125at 733.363 kb on - strand, within CSW01_18125at 733.369 kb on + strand, within CSW01_18125at 733.419 kb on + strand, within CSW01_18125at 733.426 kb on - strand, within CSW01_18125at 733.433 kb on + strand, within CSW01_18125at 733.436 kb on - strand, within CSW01_18125at 733.441 kb on - strand, within CSW01_18125at 733.443 kb on + strand, within CSW01_18125at 733.451 kb on - strand, within CSW01_18125at 733.451 kb on - strand, within CSW01_18125at 733.509 kb on - strand, within CSW01_18125at 733.515 kb on + strand, within CSW01_18125at 733.529 kb on + strand, within CSW01_18125at 733.556 kb on + strand, within CSW01_18125at 733.574 kb on + strand, within CSW01_18125at 733.574 kb on + strand, within CSW01_18125at 733.679 kb on - strand, within CSW01_18125at 733.709 kb on + strand, within CSW01_18125at 733.717 kb on + strand, within CSW01_18125at 733.725 kb on - strand, within CSW01_18125at 733.760 kb on - strand, within CSW01_18125at 733.821 kb on + strand, within CSW01_18125at 733.843 kb on + strandat 733.879 kb on + strandat 733.879 kb on + strandat 733.937 kb on + strandat 735.212 kb on - strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.288 kb on + strandat 735.295 kb on - strand, within CSW01_18135at 735.295 kb on - strand, within CSW01_18135at 735.297 kb on + strand, within CSW01_18135at 735.297 kb on + strand, within CSW01_18135at 735.300 kb on + strand, within CSW01_18135at 735.312 kb on - strand, within CSW01_18135at 735.435 kb on + strand, within CSW01_18135at 735.435 kb on + strand, within CSW01_18135at 735.443 kb on - strand, within CSW01_18135at 735.459 kb on + strand, within CSW01_18135at 735.467 kb on - strand, within CSW01_18135at 735.488 kb on - strand, within CSW01_18135at 735.495 kb on + strand, within CSW01_18135at 735.577 kb on - strand, within CSW01_18135at 735.579 kb on - strand, within CSW01_18135at 735.634 kb on - strand, within CSW01_18135at 735.672 kb on + strand, within CSW01_18135at 735.703 kb on - strandat 735.863 kb on + strand, within CSW01_18140at 735.871 kb on - strand, within CSW01_18140at 735.871 kb on - strand, within CSW01_18140at 735.908 kb on + strand, within CSW01_18140at 735.916 kb on - strand, within CSW01_18140at 735.916 kb on - strand, within CSW01_18140at 735.935 kb on - strand, within CSW01_18140at 735.945 kb on + strand, within CSW01_18140at 735.953 kb on - strand, within CSW01_18140at 736.012 kb on - strandat 736.119 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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733,001 + CSW01_18125 0.30 +1.0
733,009 - CSW01_18125 0.31 -0.4
733,203 + CSW01_18125 0.45 -2.5
733,203 + CSW01_18125 0.45 +2.5
733,211 - CSW01_18125 0.46 -0.2
733,238 - CSW01_18125 0.48 +2.6
733,254 - CSW01_18125 0.49 -0.1
733,286 + CSW01_18125 0.51 -2.1
733,291 - CSW01_18125 0.51 -0.8
733,317 - CSW01_18125 0.53 +1.9
733,361 + CSW01_18125 0.56 +0.8
733,363 - CSW01_18125 0.57 +0.2
733,369 + CSW01_18125 0.57 -0.1
733,419 + CSW01_18125 0.61 +1.4
733,426 - CSW01_18125 0.61 +0.6
733,433 + CSW01_18125 0.62 -0.9
733,436 - CSW01_18125 0.62 -2.7
733,441 - CSW01_18125 0.62 +0.5
733,443 + CSW01_18125 0.62 -1.7
733,451 - CSW01_18125 0.63 +1.1
733,451 - CSW01_18125 0.63 -0.9
733,509 - CSW01_18125 0.67 -0.0
733,515 + CSW01_18125 0.68 -2.9
733,529 + CSW01_18125 0.69 -0.9
733,556 + CSW01_18125 0.71 +0.2
733,574 + CSW01_18125 0.72 -0.6
733,574 + CSW01_18125 0.72 -0.1
733,679 - CSW01_18125 0.79 +0.2
733,709 + CSW01_18125 0.82 -0.2
733,717 + CSW01_18125 0.82 +1.4
733,725 - CSW01_18125 0.83 +0.9
733,760 - CSW01_18125 0.85 +2.7
733,821 + CSW01_18125 0.90 -3.1
733,843 + -1.4
733,879 + +2.1
733,879 + -3.0
733,937 + -0.3
735,212 - -1.5
735,219 + -0.6
735,219 + -2.0
735,219 + -0.0
735,219 + +1.3
735,219 + -0.2
735,219 + -2.5
735,227 - +0.3
735,227 - +0.5
735,227 - -2.4
735,227 - -0.7
735,288 + +0.9
735,295 - CSW01_18135 0.11 -0.2
735,295 - CSW01_18135 0.11 -0.7
735,297 + CSW01_18135 0.11 -0.9
735,297 + CSW01_18135 0.11 +0.0
735,300 + CSW01_18135 0.12 +0.8
735,312 - CSW01_18135 0.14 +1.3
735,435 + CSW01_18135 0.40 -1.8
735,435 + CSW01_18135 0.40 +0.4
735,443 - CSW01_18135 0.41 -2.3
735,459 + CSW01_18135 0.45 +1.1
735,467 - CSW01_18135 0.46 +1.2
735,488 - CSW01_18135 0.51 +0.6
735,495 + CSW01_18135 0.52 -2.2
735,577 - CSW01_18135 0.69 +0.0
735,579 - CSW01_18135 0.69 +1.6
735,634 - CSW01_18135 0.81 +0.8
735,672 + CSW01_18135 0.89 +0.6
735,703 - -0.1
735,863 + CSW01_18140 0.46 -0.1
735,871 - CSW01_18140 0.49 -2.6
735,871 - CSW01_18140 0.49 -1.3
735,908 + CSW01_18140 0.62 +0.7
735,916 - CSW01_18140 0.64 -1.1
735,916 - CSW01_18140 0.64 -2.2
735,935 - CSW01_18140 0.71 +1.4
735,945 + CSW01_18140 0.74 +0.8
735,953 - CSW01_18140 0.77 +1.6
736,012 - +0.3
736,119 - -1.5

Or see this region's nucleotide sequence