Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18035

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18025 and CSW01_18030 are separated by 36 nucleotidesCSW01_18030 and CSW01_18035 are separated by 363 nucleotidesCSW01_18035 and CSW01_18040 are separated by 227 nucleotides CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519 _18025 CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675 _18030 CSW01_18035: CSW01_18035 - tyrosine transporter TyrP, at 712,039 to 713,241 _18035 CSW01_18040: CSW01_18040 - methyl-accepting chemotaxis protein, at 713,469 to 714,890 _18040 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 711.041 kb on + strand, within CSW01_18025at 711.041 kb on + strand, within CSW01_18025at 711.069 kb on + strand, within CSW01_18025at 711.074 kb on + strand, within CSW01_18025at 711.079 kb on + strand, within CSW01_18025at 711.082 kb on - strand, within CSW01_18025at 711.100 kb on + strand, within CSW01_18025at 711.124 kb on + strand, within CSW01_18025at 711.199 kb on + strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.207 kb on - strand, within CSW01_18025at 711.260 kb on - strand, within CSW01_18025at 711.285 kb on + strand, within CSW01_18025at 711.372 kb on + strand, within CSW01_18025at 711.385 kb on + strand, within CSW01_18025at 711.587 kb on - strand, within CSW01_18030at 711.637 kb on - strand, within CSW01_18030at 711.639 kb on + strand, within CSW01_18030at 711.647 kb on - strand, within CSW01_18030at 711.683 kb on - strandat 711.683 kb on - strandat 711.710 kb on + strandat 711.737 kb on + strandat 711.761 kb on - strandat 711.767 kb on + strandat 711.817 kb on - strandat 712.284 kb on - strand, within CSW01_18035at 712.471 kb on - strand, within CSW01_18035at 712.500 kb on + strand, within CSW01_18035at 712.551 kb on + strand, within CSW01_18035at 712.559 kb on - strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.673 kb on + strand, within CSW01_18035at 712.681 kb on - strand, within CSW01_18035at 712.681 kb on - strand, within CSW01_18035at 712.748 kb on + strand, within CSW01_18035at 712.748 kb on + strand, within CSW01_18035at 712.781 kb on + strand, within CSW01_18035at 712.812 kb on + strand, within CSW01_18035at 712.831 kb on - strand, within CSW01_18035at 712.873 kb on + strand, within CSW01_18035at 712.909 kb on - strand, within CSW01_18035at 713.018 kb on - strand, within CSW01_18035at 713.048 kb on - strand, within CSW01_18035at 713.130 kb on - strandat 713.136 kb on + strandat 713.178 kb on - strandat 713.208 kb on + strandat 713.252 kb on + strandat 713.254 kb on + strandat 713.260 kb on - strandat 713.455 kb on + strandat 713.599 kb on + strandat 713.607 kb on - strandat 713.609 kb on - strandat 713.621 kb on + strand, within CSW01_18040at 713.674 kb on - strand, within CSW01_18040at 713.771 kb on + strand, within CSW01_18040at 713.774 kb on - strand, within CSW01_18040at 713.779 kb on - strand, within CSW01_18040at 713.780 kb on - strand, within CSW01_18040at 713.829 kb on - strand, within CSW01_18040at 714.020 kb on + strand, within CSW01_18040at 714.063 kb on + strand, within CSW01_18040at 714.071 kb on - strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.073 kb on + strand, within CSW01_18040at 714.079 kb on + strand, within CSW01_18040

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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711,041 + CSW01_18025 0.18 -1.3
711,041 + CSW01_18025 0.18 -0.4
711,069 + CSW01_18025 0.23 -0.6
711,074 + CSW01_18025 0.23 -0.8
711,079 + CSW01_18025 0.24 +0.0
711,082 - CSW01_18025 0.25 -0.1
711,100 + CSW01_18025 0.28 +0.1
711,124 + CSW01_18025 0.32 +0.5
711,199 + CSW01_18025 0.45 -0.4
711,207 - CSW01_18025 0.46 -0.7
711,207 - CSW01_18025 0.46 +0.1
711,260 - CSW01_18025 0.55 +0.2
711,285 + CSW01_18025 0.60 -1.0
711,372 + CSW01_18025 0.75 +0.1
711,385 + CSW01_18025 0.77 -0.0
711,587 - CSW01_18030 0.26 +0.7
711,637 - CSW01_18030 0.68 +0.8
711,639 + CSW01_18030 0.69 -1.8
711,647 - CSW01_18030 0.76 -1.2
711,683 - +0.8
711,683 - -3.5
711,710 + +0.8
711,737 + +1.1
711,761 - -0.7
711,767 + -0.4
711,817 - -1.3
712,284 - CSW01_18035 0.20 -0.5
712,471 - CSW01_18035 0.36 -1.8
712,500 + CSW01_18035 0.38 -0.9
712,551 + CSW01_18035 0.43 -2.5
712,559 - CSW01_18035 0.43 -1.5
712,673 + CSW01_18035 0.53 +1.7
712,673 + CSW01_18035 0.53 -2.2
712,673 + CSW01_18035 0.53 +1.1
712,673 + CSW01_18035 0.53 -1.8
712,673 + CSW01_18035 0.53 +0.4
712,681 - CSW01_18035 0.53 +0.3
712,681 - CSW01_18035 0.53 +0.3
712,748 + CSW01_18035 0.59 +0.7
712,748 + CSW01_18035 0.59 -0.6
712,781 + CSW01_18035 0.62 +0.8
712,812 + CSW01_18035 0.64 +1.7
712,831 - CSW01_18035 0.66 -1.9
712,873 + CSW01_18035 0.69 -3.0
712,909 - CSW01_18035 0.72 +3.4
713,018 - CSW01_18035 0.81 -3.2
713,048 - CSW01_18035 0.84 -1.1
713,130 - -3.2
713,136 + +1.3
713,178 - -0.5
713,208 + -0.8
713,252 + +0.3
713,254 + -0.6
713,260 - +0.8
713,455 + -1.8
713,599 + -1.7
713,607 - +0.9
713,609 - -0.6
713,621 + CSW01_18040 0.11 +1.3
713,674 - CSW01_18040 0.14 -1.5
713,771 + CSW01_18040 0.21 +1.2
713,774 - CSW01_18040 0.21 +0.5
713,779 - CSW01_18040 0.22 -0.4
713,780 - CSW01_18040 0.22 -1.1
713,829 - CSW01_18040 0.25 -2.8
714,020 + CSW01_18040 0.39 +0.2
714,063 + CSW01_18040 0.42 -1.8
714,071 - CSW01_18040 0.42 -0.2
714,073 + CSW01_18040 0.42 -2.8
714,073 + CSW01_18040 0.42 -1.8
714,079 + CSW01_18040 0.43 -0.5

Or see this region's nucleotide sequence