Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17870 and CSW01_17875 are separated by 16 nucleotides CSW01_17875 and CSW01_17880 are separated by 41 nucleotides CSW01_17880 and CSW01_17885 are separated by 187 nucleotides CSW01_17885 and CSW01_17890 overlap by 1 nucleotides CSW01_17890 and CSW01_17895 are separated by 263 nucleotides
CSW01_17870: CSW01_17870 - GIY-YIG nuclease family protein, at 683,814 to 684,119
_17870
CSW01_17875: CSW01_17875 - DUF480 domain-containing protein, at 684,136 to 684,786
_17875
CSW01_17880: CSW01_17880 - hypothetical protein, at 684,828 to 685,025
_17880
CSW01_17885: CSW01_17885 - hypothetical protein, at 685,213 to 685,533
_17885
CSW01_17890: CSW01_17890 - hypothetical protein, at 685,533 to 685,682
_17890
CSW01_17895: CSW01_17895 - hypothetical protein, at 685,946 to 686,197
_17895
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.886 kb on - strand, within CSW01_17870 at 683.947 kb on + strand, within CSW01_17870 at 683.955 kb on - strand, within CSW01_17870 at 684.036 kb on + strand, within CSW01_17870 at 684.043 kb on + strand, within CSW01_17870 at 684.051 kb on - strand, within CSW01_17870 at 684.091 kb on + strand at 684.099 kb on - strand at 684.189 kb on + strand at 684.219 kb on + strand, within CSW01_17875 at 684.271 kb on + strand, within CSW01_17875 at 684.279 kb on - strand, within CSW01_17875 at 684.305 kb on + strand, within CSW01_17875 at 684.311 kb on + strand, within CSW01_17875 at 684.378 kb on - strand, within CSW01_17875 at 684.417 kb on + strand, within CSW01_17875 at 684.418 kb on - strand, within CSW01_17875 at 684.456 kb on - strand, within CSW01_17875 at 684.465 kb on + strand, within CSW01_17875 at 684.473 kb on - strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.616 kb on + strand, within CSW01_17875 at 684.640 kb on + strand, within CSW01_17875 at 684.757 kb on + strand at 684.801 kb on - strand at 684.834 kb on - strand at 684.925 kb on - strand, within CSW01_17880 at 684.970 kb on + strand, within CSW01_17880 at 685.031 kb on + strand at 685.033 kb on + strand at 685.039 kb on + strand at 685.041 kb on - strand at 685.170 kb on + strand at 685.178 kb on - strand at 685.210 kb on + strand at 685.210 kb on + strand at 685.218 kb on - strand at 685.313 kb on - strand, within CSW01_17885 at 685.313 kb on - strand, within CSW01_17885 at 685.326 kb on + strand, within CSW01_17885 at 685.567 kb on - strand, within CSW01_17890 at 685.755 kb on - strand at 685.826 kb on + strand at 685.826 kb on + strand at 685.863 kb on + strand at 685.909 kb on + strand at 685.909 kb on + strand at 685.918 kb on + strand at 685.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 683,886 - CSW01_17870 0.24 +1.6 683,947 + CSW01_17870 0.43 +0.6 683,955 - CSW01_17870 0.46 +0.6 684,036 + CSW01_17870 0.73 +0.5 684,043 + CSW01_17870 0.75 -1.3 684,051 - CSW01_17870 0.77 +0.4 684,091 + -0.3 684,099 - +0.1 684,189 + -0.4 684,219 + CSW01_17875 0.13 -1.6 684,271 + CSW01_17875 0.21 -1.2 684,279 - CSW01_17875 0.22 +0.0 684,305 + CSW01_17875 0.26 -1.4 684,311 + CSW01_17875 0.27 +0.9 684,378 - CSW01_17875 0.37 -0.3 684,417 + CSW01_17875 0.43 -0.4 684,418 - CSW01_17875 0.43 +0.4 684,456 - CSW01_17875 0.49 -1.0 684,465 + CSW01_17875 0.51 -0.3 684,473 - CSW01_17875 0.52 -0.0 684,597 + CSW01_17875 0.71 -2.6 684,597 + CSW01_17875 0.71 -1.3 684,616 + CSW01_17875 0.74 -1.2 684,640 + CSW01_17875 0.77 -3.0 684,757 + -1.1 684,801 - +1.4 684,834 - +1.2 684,925 - CSW01_17880 0.49 +0.5 684,970 + CSW01_17880 0.72 -0.7 685,031 + -0.7 685,033 + -3.3 685,039 + -0.1 685,041 - -0.9 685,170 + -1.5 685,178 - +0.3 685,210 + +1.1 685,210 + +0.1 685,218 - -0.1 685,313 - CSW01_17885 0.31 -1.1 685,313 - CSW01_17885 0.31 -1.7 685,326 + CSW01_17885 0.35 -2.2 685,567 - CSW01_17890 0.23 +0.5 685,755 - -0.6 685,826 + -0.7 685,826 + -1.3 685,863 + +1.1 685,909 + -0.4 685,909 + -0.7 685,918 + -2.8 685,927 - +1.9
Or see this region's nucleotide sequence