Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17865

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17860 and CSW01_17865 are separated by 211 nucleotidesCSW01_17865 and CSW01_17870 are separated by 101 nucleotidesCSW01_17870 and CSW01_17875 are separated by 16 nucleotides CSW01_17860: CSW01_17860 - autoinducer 2-binding periplasmic protein LuxP, at 681,246 to 682,340 _17860 CSW01_17865: CSW01_17865 - conjugal transfer protein TraF, at 682,552 to 683,712 _17865 CSW01_17870: CSW01_17870 - GIY-YIG nuclease family protein, at 683,814 to 684,119 _17870 CSW01_17875: CSW01_17875 - DUF480 domain-containing protein, at 684,136 to 684,786 _17875 Position (kb) 682 683 684Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 681.563 kb on - strand, within CSW01_17860at 681.563 kb on - strand, within CSW01_17860at 681.594 kb on + strand, within CSW01_17860at 681.691 kb on - strand, within CSW01_17860at 681.719 kb on - strand, within CSW01_17860at 681.884 kb on + strand, within CSW01_17860at 681.894 kb on + strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 681.902 kb on - strand, within CSW01_17860at 682.028 kb on - strand, within CSW01_17860at 682.060 kb on + strand, within CSW01_17860at 682.202 kb on + strand, within CSW01_17860at 682.275 kb on + strandat 682.301 kb on - strandat 682.489 kb on + strandat 682.497 kb on - strandat 682.695 kb on + strand, within CSW01_17865at 682.695 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.706 kb on + strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.714 kb on - strand, within CSW01_17865at 682.718 kb on + strand, within CSW01_17865at 682.726 kb on - strand, within CSW01_17865at 682.726 kb on - strand, within CSW01_17865at 682.743 kb on - strand, within CSW01_17865at 682.811 kb on - strand, within CSW01_17865at 682.854 kb on - strand, within CSW01_17865at 682.996 kb on - strand, within CSW01_17865at 683.058 kb on - strand, within CSW01_17865at 683.090 kb on - strand, within CSW01_17865at 683.162 kb on - strand, within CSW01_17865at 683.165 kb on + strand, within CSW01_17865at 683.213 kb on - strand, within CSW01_17865at 683.241 kb on - strand, within CSW01_17865at 683.261 kb on - strand, within CSW01_17865at 683.299 kb on - strand, within CSW01_17865at 683.310 kb on + strand, within CSW01_17865at 683.343 kb on - strand, within CSW01_17865at 683.343 kb on - strand, within CSW01_17865at 683.390 kb on - strand, within CSW01_17865at 683.428 kb on - strand, within CSW01_17865at 683.451 kb on + strand, within CSW01_17865at 683.493 kb on + strand, within CSW01_17865at 683.493 kb on + strand, within CSW01_17865at 683.493 kb on + strand, within CSW01_17865at 683.493 kb on + strand, within CSW01_17865at 683.493 kb on + strand, within CSW01_17865at 683.501 kb on - strand, within CSW01_17865at 683.501 kb on - strand, within CSW01_17865at 683.501 kb on - strand, within CSW01_17865at 683.501 kb on - strand, within CSW01_17865at 683.501 kb on - strand, within CSW01_17865at 683.555 kb on + strand, within CSW01_17865at 683.618 kb on - strandat 683.672 kb on + strandat 683.733 kb on + strandat 683.752 kb on + strandat 683.886 kb on - strand, within CSW01_17870at 683.947 kb on + strand, within CSW01_17870at 683.955 kb on - strand, within CSW01_17870at 684.036 kb on + strand, within CSW01_17870at 684.043 kb on + strand, within CSW01_17870at 684.051 kb on - strand, within CSW01_17870at 684.091 kb on + strandat 684.099 kb on - strandat 684.189 kb on + strandat 684.219 kb on + strand, within CSW01_17875at 684.271 kb on + strand, within CSW01_17875at 684.279 kb on - strand, within CSW01_17875at 684.305 kb on + strand, within CSW01_17875at 684.311 kb on + strand, within CSW01_17875at 684.378 kb on - strand, within CSW01_17875at 684.417 kb on + strand, within CSW01_17875at 684.418 kb on - strand, within CSW01_17875at 684.456 kb on - strand, within CSW01_17875at 684.465 kb on + strand, within CSW01_17875at 684.473 kb on - strand, within CSW01_17875at 684.597 kb on + strand, within CSW01_17875at 684.597 kb on + strand, within CSW01_17875at 684.616 kb on + strand, within CSW01_17875at 684.640 kb on + strand, within CSW01_17875

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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681,563 - CSW01_17860 0.29 -1.4
681,563 - CSW01_17860 0.29 -0.2
681,594 + CSW01_17860 0.32 -1.5
681,691 - CSW01_17860 0.41 -0.5
681,719 - CSW01_17860 0.43 +0.4
681,884 + CSW01_17860 0.58 +0.1
681,894 + CSW01_17860 0.59 +0.0
681,902 - CSW01_17860 0.60 +1.3
681,902 - CSW01_17860 0.60 -0.2
682,028 - CSW01_17860 0.71 -0.5
682,060 + CSW01_17860 0.74 +0.7
682,202 + CSW01_17860 0.87 +0.4
682,275 + +0.0
682,301 - +1.4
682,489 + +1.6
682,497 - +1.5
682,695 + CSW01_17865 0.12 +0.7
682,695 + CSW01_17865 0.12 -0.3
682,706 + CSW01_17865 0.13 +0.5
682,706 + CSW01_17865 0.13 +1.0
682,706 + CSW01_17865 0.13 -0.7
682,706 + CSW01_17865 0.13 -3.1
682,706 + CSW01_17865 0.13 -2.1
682,706 + CSW01_17865 0.13 +0.5
682,706 + CSW01_17865 0.13 -1.2
682,706 + CSW01_17865 0.13 -0.5
682,706 + CSW01_17865 0.13 +1.4
682,714 - CSW01_17865 0.14 +0.2
682,714 - CSW01_17865 0.14 -2.2
682,714 - CSW01_17865 0.14 +0.7
682,714 - CSW01_17865 0.14 +1.5
682,714 - CSW01_17865 0.14 -0.5
682,714 - CSW01_17865 0.14 -3.0
682,714 - CSW01_17865 0.14 +1.8
682,714 - CSW01_17865 0.14 -0.3
682,714 - CSW01_17865 0.14 +1.5
682,718 + CSW01_17865 0.14 -1.6
682,726 - CSW01_17865 0.15 -2.6
682,726 - CSW01_17865 0.15 +1.3
682,743 - CSW01_17865 0.16 -0.6
682,811 - CSW01_17865 0.22 +0.7
682,854 - CSW01_17865 0.26 -0.1
682,996 - CSW01_17865 0.38 -0.4
683,058 - CSW01_17865 0.44 +0.4
683,090 - CSW01_17865 0.46 +1.2
683,162 - CSW01_17865 0.53 +0.3
683,165 + CSW01_17865 0.53 +0.5
683,213 - CSW01_17865 0.57 +1.3
683,241 - CSW01_17865 0.59 -0.2
683,261 - CSW01_17865 0.61 -0.5
683,299 - CSW01_17865 0.64 +0.8
683,310 + CSW01_17865 0.65 -1.1
683,343 - CSW01_17865 0.68 +0.2
683,343 - CSW01_17865 0.68 -1.9
683,390 - CSW01_17865 0.72 -0.9
683,428 - CSW01_17865 0.75 -1.4
683,451 + CSW01_17865 0.77 -1.9
683,493 + CSW01_17865 0.81 -0.2
683,493 + CSW01_17865 0.81 +0.4
683,493 + CSW01_17865 0.81 +1.3
683,493 + CSW01_17865 0.81 -0.4
683,493 + CSW01_17865 0.81 -3.0
683,501 - CSW01_17865 0.82 -1.8
683,501 - CSW01_17865 0.82 -1.5
683,501 - CSW01_17865 0.82 -2.1
683,501 - CSW01_17865 0.82 +0.2
683,501 - CSW01_17865 0.82 +0.7
683,555 + CSW01_17865 0.86 +0.5
683,618 - +0.1
683,672 + -1.2
683,733 + +0.1
683,752 + -1.4
683,886 - CSW01_17870 0.24 +1.6
683,947 + CSW01_17870 0.43 +0.6
683,955 - CSW01_17870 0.46 +0.6
684,036 + CSW01_17870 0.73 +0.5
684,043 + CSW01_17870 0.75 -1.3
684,051 - CSW01_17870 0.77 +0.4
684,091 + -0.3
684,099 - +0.1
684,189 + -0.4
684,219 + CSW01_17875 0.13 -1.6
684,271 + CSW01_17875 0.21 -1.2
684,279 - CSW01_17875 0.22 +0.0
684,305 + CSW01_17875 0.26 -1.4
684,311 + CSW01_17875 0.27 +0.9
684,378 - CSW01_17875 0.37 -0.3
684,417 + CSW01_17875 0.43 -0.4
684,418 - CSW01_17875 0.43 +0.4
684,456 - CSW01_17875 0.49 -1.0
684,465 + CSW01_17875 0.51 -0.3
684,473 - CSW01_17875 0.52 -0.0
684,597 + CSW01_17875 0.71 -2.6
684,597 + CSW01_17875 0.71 -1.3
684,616 + CSW01_17875 0.74 -1.2
684,640 + CSW01_17875 0.77 -3.0

Or see this region's nucleotide sequence