Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17565

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17555 and CSW01_17560 are separated by 50 nucleotidesCSW01_17560 and CSW01_17565 overlap by 11 nucleotidesCSW01_17565 and CSW01_17570 are separated by 157 nucleotidesCSW01_17570 and CSW01_17575 are separated by 5 nucleotides CSW01_17555: CSW01_17555 - LacI family transcriptional regulator, at 606,280 to 607,311 _17555 CSW01_17560: CSW01_17560 - DNA-binding response regulator, at 607,362 to 607,988 _17560 CSW01_17565: CSW01_17565 - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 607,978 to 609,729 _17565 CSW01_17570: CSW01_17570 - ferredoxin-type protein NapF, at 609,887 to 610,393 _17570 CSW01_17575: CSW01_17575 - mycothiol reductase, at 610,399 to 610,740 _17575 Position (kb) 607 608 609 610Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 607.042 kb on + strand, within CSW01_17555at 607.050 kb on - strand, within CSW01_17555at 607.063 kb on + strand, within CSW01_17555at 607.117 kb on - strand, within CSW01_17555at 607.117 kb on - strand, within CSW01_17555at 607.157 kb on + strand, within CSW01_17555at 607.157 kb on + strand, within CSW01_17555at 607.165 kb on - strand, within CSW01_17555at 607.243 kb on + strandat 607.267 kb on - strandat 607.285 kb on - strandat 607.368 kb on - strandat 607.507 kb on + strand, within CSW01_17560at 607.525 kb on - strand, within CSW01_17560at 607.552 kb on - strand, within CSW01_17560at 607.561 kb on + strand, within CSW01_17560at 607.636 kb on + strand, within CSW01_17560at 607.663 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.739 kb on - strand, within CSW01_17560at 607.739 kb on - strand, within CSW01_17560at 607.767 kb on - strand, within CSW01_17560at 607.769 kb on + strand, within CSW01_17560at 607.777 kb on - strand, within CSW01_17560at 607.792 kb on - strand, within CSW01_17560at 607.879 kb on - strand, within CSW01_17560at 608.035 kb on - strandat 608.057 kb on + strandat 608.182 kb on + strand, within CSW01_17565at 608.185 kb on - strand, within CSW01_17565at 608.185 kb on - strand, within CSW01_17565at 608.224 kb on - strand, within CSW01_17565at 608.335 kb on + strand, within CSW01_17565at 608.419 kb on - strand, within CSW01_17565at 608.419 kb on - strand, within CSW01_17565at 608.441 kb on - strand, within CSW01_17565at 608.633 kb on + strand, within CSW01_17565at 608.633 kb on + strand, within CSW01_17565at 608.641 kb on - strand, within CSW01_17565at 608.829 kb on - strand, within CSW01_17565at 608.876 kb on + strand, within CSW01_17565at 608.961 kb on - strand, within CSW01_17565at 609.017 kb on - strand, within CSW01_17565at 609.036 kb on + strand, within CSW01_17565at 609.139 kb on + strand, within CSW01_17565at 609.225 kb on + strand, within CSW01_17565at 609.296 kb on - strand, within CSW01_17565at 609.353 kb on + strand, within CSW01_17565at 609.421 kb on + strand, within CSW01_17565at 609.431 kb on - strand, within CSW01_17565at 609.455 kb on + strand, within CSW01_17565at 609.455 kb on + strand, within CSW01_17565at 609.456 kb on - strand, within CSW01_17565at 609.463 kb on - strand, within CSW01_17565at 609.533 kb on + strand, within CSW01_17565at 609.541 kb on - strand, within CSW01_17565at 609.581 kb on - strandat 609.628 kb on - strandat 609.700 kb on - strandat 609.700 kb on - strandat 609.730 kb on + strandat 609.738 kb on - strandat 609.740 kb on + strandat 609.740 kb on + strandat 609.748 kb on - strandat 609.748 kb on - strandat 609.755 kb on - strandat 609.884 kb on + strandat 609.967 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.021 kb on + strand, within CSW01_17570at 610.031 kb on - strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.121 kb on + strand, within CSW01_17570at 610.126 kb on + strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.129 kb on - strand, within CSW01_17570at 610.139 kb on - strand, within CSW01_17570at 610.159 kb on - strand, within CSW01_17570at 610.163 kb on + strand, within CSW01_17570at 610.193 kb on - strand, within CSW01_17570at 610.198 kb on - strand, within CSW01_17570at 610.287 kb on + strand, within CSW01_17570at 610.300 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.305 kb on + strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.308 kb on - strand, within CSW01_17570at 610.384 kb on - strandat 610.384 kb on - strandat 610.499 kb on + strand, within CSW01_17575at 610.594 kb on + strand, within CSW01_17575at 610.596 kb on - strand, within CSW01_17575at 610.641 kb on + strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575at 610.701 kb on - strand, within CSW01_17575

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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607,042 + CSW01_17555 0.74 +0.8
607,050 - CSW01_17555 0.75 +2.0
607,063 + CSW01_17555 0.76 -2.0
607,117 - CSW01_17555 0.81 -1.3
607,117 - CSW01_17555 0.81 -1.1
607,157 + CSW01_17555 0.85 -0.2
607,157 + CSW01_17555 0.85 +0.5
607,165 - CSW01_17555 0.86 +0.7
607,243 + +0.3
607,267 - -0.5
607,285 - -0.8
607,368 - +0.8
607,507 + CSW01_17560 0.23 +0.1
607,525 - CSW01_17560 0.26 +1.3
607,552 - CSW01_17560 0.30 -1.4
607,561 + CSW01_17560 0.32 -0.3
607,636 + CSW01_17560 0.44 +0.5
607,663 + CSW01_17560 0.48 -1.3
607,731 + CSW01_17560 0.59 +0.6
607,731 + CSW01_17560 0.59 -2.4
607,731 + CSW01_17560 0.59 -0.0
607,731 + CSW01_17560 0.59 +0.5
607,739 - CSW01_17560 0.60 +1.1
607,739 - CSW01_17560 0.60 -0.9
607,767 - CSW01_17560 0.65 +1.1
607,769 + CSW01_17560 0.65 -1.8
607,777 - CSW01_17560 0.66 +1.3
607,792 - CSW01_17560 0.69 -0.1
607,879 - CSW01_17560 0.82 -0.3
608,035 - +0.2
608,057 + -1.2
608,182 + CSW01_17565 0.12 -1.3
608,185 - CSW01_17565 0.12 -1.2
608,185 - CSW01_17565 0.12 +1.3
608,224 - CSW01_17565 0.14 +0.9
608,335 + CSW01_17565 0.20 -1.2
608,419 - CSW01_17565 0.25 -0.2
608,419 - CSW01_17565 0.25 -2.0
608,441 - CSW01_17565 0.26 -1.6
608,633 + CSW01_17565 0.37 -1.4
608,633 + CSW01_17565 0.37 +0.7
608,641 - CSW01_17565 0.38 -3.0
608,829 - CSW01_17565 0.49 +1.0
608,876 + CSW01_17565 0.51 -0.8
608,961 - CSW01_17565 0.56 -0.5
609,017 - CSW01_17565 0.59 -2.4
609,036 + CSW01_17565 0.60 -1.6
609,139 + CSW01_17565 0.66 -0.7
609,225 + CSW01_17565 0.71 -2.1
609,296 - CSW01_17565 0.75 +0.1
609,353 + CSW01_17565 0.78 -0.0
609,421 + CSW01_17565 0.82 +1.7
609,431 - CSW01_17565 0.83 +0.9
609,455 + CSW01_17565 0.84 -1.5
609,455 + CSW01_17565 0.84 +0.8
609,456 - CSW01_17565 0.84 +0.5
609,463 - CSW01_17565 0.85 -0.2
609,533 + CSW01_17565 0.89 -1.7
609,541 - CSW01_17565 0.89 +0.4
609,581 - +1.0
609,628 - -0.7
609,700 - -2.3
609,700 - -0.7
609,730 + +0.3
609,738 - +0.3
609,740 + -0.0
609,740 + +0.6
609,748 - -2.0
609,748 - -0.2
609,755 - -1.5
609,884 + +0.8
609,967 + CSW01_17570 0.16 -2.3
610,021 + CSW01_17570 0.26 -2.1
610,021 + CSW01_17570 0.26 +0.7
610,031 - CSW01_17570 0.28 -0.2
610,121 + CSW01_17570 0.46 -0.3
610,121 + CSW01_17570 0.46 -2.8
610,126 + CSW01_17570 0.47 -1.9
610,129 - CSW01_17570 0.48 +0.4
610,129 - CSW01_17570 0.48 -1.2
610,139 - CSW01_17570 0.50 +0.9
610,159 - CSW01_17570 0.54 -1.7
610,163 + CSW01_17570 0.54 -2.4
610,193 - CSW01_17570 0.60 -1.1
610,198 - CSW01_17570 0.61 +0.7
610,287 + CSW01_17570 0.79 +0.8
610,300 + CSW01_17570 0.81 -0.9
610,305 + CSW01_17570 0.82 -2.1
610,305 + CSW01_17570 0.82 -2.4
610,308 - CSW01_17570 0.83 +1.0
610,308 - CSW01_17570 0.83 +0.1
610,384 - -1.2
610,384 - -1.7
610,499 + CSW01_17575 0.29 +1.0
610,594 + CSW01_17575 0.57 +1.3
610,596 - CSW01_17575 0.58 -0.7
610,641 + CSW01_17575 0.71 -2.6
610,701 - CSW01_17575 0.88 +0.5
610,701 - CSW01_17575 0.88 -0.5

Or see this region's nucleotide sequence