Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17540

Experiment: ICP1_phage_0.23_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17535 and CSW01_17540 overlap by 50 nucleotidesCSW01_17540 and CSW01_17545 are separated by 338 nucleotides CSW01_17535: CSW01_17535 - L-serine ammonia-lyase, at 600,371 to 601,801 _17535 CSW01_17540: CSW01_17540 - sodium:solute symporter, at 601,752 to 603,293 _17540 CSW01_17545: CSW01_17545 - MFS transporter, at 603,632 to 604,927 _17545 Position (kb) 601 602 603 604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 600.822 kb on - strand, within CSW01_17535at 600.866 kb on + strand, within CSW01_17535at 600.905 kb on - strand, within CSW01_17535at 600.949 kb on + strand, within CSW01_17535at 600.957 kb on - strand, within CSW01_17535at 600.961 kb on - strand, within CSW01_17535at 601.208 kb on + strand, within CSW01_17535at 601.244 kb on - strand, within CSW01_17535at 601.314 kb on + strand, within CSW01_17535at 601.498 kb on - strand, within CSW01_17535at 601.581 kb on + strand, within CSW01_17535at 601.589 kb on - strand, within CSW01_17535at 601.758 kb on - strandat 602.083 kb on - strand, within CSW01_17540at 602.112 kb on + strand, within CSW01_17540at 602.143 kb on - strand, within CSW01_17540at 602.199 kb on + strand, within CSW01_17540at 602.215 kb on + strand, within CSW01_17540at 602.223 kb on + strand, within CSW01_17540at 602.312 kb on - strand, within CSW01_17540at 602.396 kb on + strand, within CSW01_17540at 602.622 kb on + strand, within CSW01_17540at 602.759 kb on - strand, within CSW01_17540at 602.888 kb on + strand, within CSW01_17540at 602.888 kb on + strand, within CSW01_17540at 602.917 kb on + strand, within CSW01_17540at 602.932 kb on + strand, within CSW01_17540at 602.940 kb on - strand, within CSW01_17540at 602.941 kb on - strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.954 kb on + strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 602.974 kb on - strand, within CSW01_17540at 603.124 kb on + strand, within CSW01_17540at 603.137 kb on - strand, within CSW01_17540at 603.395 kb on - strandat 603.405 kb on - strandat 603.683 kb on - strandat 603.802 kb on + strand, within CSW01_17545at 603.810 kb on - strand, within CSW01_17545at 603.810 kb on - strand, within CSW01_17545at 603.885 kb on + strand, within CSW01_17545at 603.928 kb on - strand, within CSW01_17545at 604.033 kb on + strand, within CSW01_17545at 604.039 kb on - strand, within CSW01_17545at 604.041 kb on - strand, within CSW01_17545at 604.185 kb on - strand, within CSW01_17545at 604.202 kb on + strand, within CSW01_17545at 604.266 kb on - strand, within CSW01_17545at 604.268 kb on + strand, within CSW01_17545at 604.276 kb on - strand, within CSW01_17545at 604.276 kb on - strand, within CSW01_17545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
remove
600,822 - CSW01_17535 0.32 -2.0
600,866 + CSW01_17535 0.35 +1.5
600,905 - CSW01_17535 0.37 +1.3
600,949 + CSW01_17535 0.40 -0.9
600,957 - CSW01_17535 0.41 -1.1
600,961 - CSW01_17535 0.41 -3.7
601,208 + CSW01_17535 0.58 -0.8
601,244 - CSW01_17535 0.61 -0.3
601,314 + CSW01_17535 0.66 +0.6
601,498 - CSW01_17535 0.79 +1.2
601,581 + CSW01_17535 0.85 +2.2
601,589 - CSW01_17535 0.85 -0.6
601,758 - +0.7
602,083 - CSW01_17540 0.21 -2.0
602,112 + CSW01_17540 0.23 -2.2
602,143 - CSW01_17540 0.25 +2.0
602,199 + CSW01_17540 0.29 -0.2
602,215 + CSW01_17540 0.30 +1.0
602,223 + CSW01_17540 0.31 +1.0
602,312 - CSW01_17540 0.36 +0.3
602,396 + CSW01_17540 0.42 +1.4
602,622 + CSW01_17540 0.56 +0.4
602,759 - CSW01_17540 0.65 +0.1
602,888 + CSW01_17540 0.74 -1.3
602,888 + CSW01_17540 0.74 +0.5
602,917 + CSW01_17540 0.76 -2.2
602,932 + CSW01_17540 0.77 -1.6
602,940 - CSW01_17540 0.77 +0.3
602,941 - CSW01_17540 0.77 -0.3
602,954 + CSW01_17540 0.78 +0.6
602,954 + CSW01_17540 0.78 +0.5
602,954 + CSW01_17540 0.78 -1.0
602,974 - CSW01_17540 0.79 +0.5
602,974 - CSW01_17540 0.79 +1.2
602,974 - CSW01_17540 0.79 -0.9
603,124 + CSW01_17540 0.89 -1.3
603,137 - CSW01_17540 0.90 -0.9
603,395 - +0.1
603,405 - +0.8
603,683 - -1.8
603,802 + CSW01_17545 0.13 +1.3
603,810 - CSW01_17545 0.14 -1.9
603,810 - CSW01_17545 0.14 -1.2
603,885 + CSW01_17545 0.20 +1.4
603,928 - CSW01_17545 0.23 -2.3
604,033 + CSW01_17545 0.31 +1.7
604,039 - CSW01_17545 0.31 +1.5
604,041 - CSW01_17545 0.32 -3.4
604,185 - CSW01_17545 0.43 -0.5
604,202 + CSW01_17545 0.44 -1.5
604,266 - CSW01_17545 0.49 +0.6
604,268 + CSW01_17545 0.49 +0.5
604,276 - CSW01_17545 0.50 -2.8
604,276 - CSW01_17545 0.50 -1.2

Or see this region's nucleotide sequence