Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17325

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17315 and CSW01_17320 overlap by 2 nucleotidesCSW01_17320 and CSW01_17325 are separated by 483 nucleotidesCSW01_17325 and CSW01_17330 are separated by 48 nucleotides CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704 _17315 CSW01_17320: CSW01_17320 - hypothetical protein, at 554,703 to 554,813 _17320 CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247 _17325 CSW01_17330: CSW01_17330 - transketolase, at 556,296 to 558,338 _17330 Position (kb) 555 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 554.300 kb on + strand, within CSW01_17315at 554.340 kb on - strand, within CSW01_17315at 554.352 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.420 kb on - strand, within CSW01_17315at 554.481 kb on + strand, within CSW01_17315at 554.489 kb on - strand, within CSW01_17315at 554.612 kb on + strandat 554.620 kb on + strandat 554.665 kb on + strandat 554.727 kb on + strand, within CSW01_17320at 554.744 kb on + strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.750 kb on - strand, within CSW01_17320at 554.752 kb on - strand, within CSW01_17320at 554.879 kb on - strandat 554.879 kb on - strandat 554.882 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.085 kb on + strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.093 kb on - strandat 555.173 kb on + strandat 555.250 kb on + strandat 555.395 kb on + strand, within CSW01_17325at 555.395 kb on + strand, within CSW01_17325at 555.413 kb on + strand, within CSW01_17325at 555.440 kb on - strand, within CSW01_17325at 555.444 kb on + strand, within CSW01_17325at 555.459 kb on + strand, within CSW01_17325at 555.504 kb on + strand, within CSW01_17325at 555.512 kb on - strand, within CSW01_17325at 555.514 kb on + strand, within CSW01_17325at 555.751 kb on + strand, within CSW01_17325at 555.765 kb on + strand, within CSW01_17325at 555.767 kb on + strand, within CSW01_17325at 555.840 kb on + strand, within CSW01_17325at 555.866 kb on - strand, within CSW01_17325at 555.891 kb on + strand, within CSW01_17325at 555.928 kb on + strand, within CSW01_17325at 555.936 kb on - strand, within CSW01_17325at 555.954 kb on + strand, within CSW01_17325at 556.021 kb on + strand, within CSW01_17325at 556.054 kb on - strand, within CSW01_17325at 556.064 kb on - strand, within CSW01_17325at 556.113 kb on + strand, within CSW01_17325at 556.178 kb on + strandat 556.186 kb on - strandat 556.298 kb on + strandat 556.584 kb on - strand, within CSW01_17330at 556.584 kb on - strand, within CSW01_17330at 556.584 kb on - strand, within CSW01_17330at 556.584 kb on - strand, within CSW01_17330at 556.644 kb on + strand, within CSW01_17330at 556.830 kb on + strand, within CSW01_17330at 556.863 kb on - strand, within CSW01_17330at 556.863 kb on - strand, within CSW01_17330at 556.863 kb on - strand, within CSW01_17330at 556.942 kb on + strand, within CSW01_17330at 557.130 kb on + strand, within CSW01_17330at 557.130 kb on + strand, within CSW01_17330at 557.138 kb on - strand, within CSW01_17330at 557.147 kb on + strand, within CSW01_17330at 557.155 kb on - strand, within CSW01_17330

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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554,300 + CSW01_17315 0.59 -0.6
554,340 - CSW01_17315 0.63 +0.5
554,352 - CSW01_17315 0.65 +0.7
554,420 - CSW01_17315 0.71 +0.9
554,420 - CSW01_17315 0.71 +0.3
554,481 + CSW01_17315 0.78 +0.1
554,489 - CSW01_17315 0.78 +0.3
554,612 + +1.1
554,620 + -1.7
554,665 + -0.4
554,727 + CSW01_17320 0.22 -0.3
554,744 + CSW01_17320 0.37 +0.1
554,750 - CSW01_17320 0.42 +0.2
554,750 - CSW01_17320 0.42 -0.0
554,752 - CSW01_17320 0.44 +0.4
554,879 - +1.6
554,879 - -0.3
554,882 + -1.7
555,085 + -1.3
555,085 + -0.9
555,085 + +0.1
555,085 + +0.4
555,085 + +0.7
555,085 + -1.3
555,085 + +0.6
555,085 + -2.0
555,085 + +2.2
555,093 - -0.9
555,093 - -2.0
555,093 - -2.4
555,093 - -1.2
555,173 + -2.5
555,250 + -2.3
555,395 + CSW01_17325 0.10 -1.6
555,395 + CSW01_17325 0.10 -2.3
555,413 + CSW01_17325 0.12 +1.0
555,440 - CSW01_17325 0.15 -2.5
555,444 + CSW01_17325 0.15 +1.5
555,459 + CSW01_17325 0.17 -2.7
555,504 + CSW01_17325 0.22 -0.2
555,512 - CSW01_17325 0.23 -3.1
555,514 + CSW01_17325 0.23 +0.1
555,751 + CSW01_17325 0.48 +1.7
555,765 + CSW01_17325 0.49 -1.9
555,767 + CSW01_17325 0.49 -1.6
555,840 + CSW01_17325 0.57 -1.1
555,866 - CSW01_17325 0.60 -0.1
555,891 + CSW01_17325 0.62 -2.0
555,928 + CSW01_17325 0.66 +2.1
555,936 - CSW01_17325 0.67 -3.6
555,954 + CSW01_17325 0.69 -2.6
556,021 + CSW01_17325 0.76 -0.6
556,054 - CSW01_17325 0.80 +0.6
556,064 - CSW01_17325 0.81 -1.7
556,113 + CSW01_17325 0.86 -1.1
556,178 + -2.1
556,186 - -3.0
556,298 + -0.6
556,584 - CSW01_17330 0.14 -0.0
556,584 - CSW01_17330 0.14 -0.1
556,584 - CSW01_17330 0.14 -2.6
556,584 - CSW01_17330 0.14 -1.5
556,644 + CSW01_17330 0.17 -0.8
556,830 + CSW01_17330 0.26 -1.2
556,863 - CSW01_17330 0.28 -0.2
556,863 - CSW01_17330 0.28 -2.1
556,863 - CSW01_17330 0.28 -0.2
556,942 + CSW01_17330 0.32 +0.6
557,130 + CSW01_17330 0.41 +0.4
557,130 + CSW01_17330 0.41 -0.8
557,138 - CSW01_17330 0.41 -0.2
557,147 + CSW01_17330 0.42 +0.8
557,155 - CSW01_17330 0.42 +0.9

Or see this region's nucleotide sequence