Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17210 and CSW01_17215 are separated by 99 nucleotides CSW01_17215 and CSW01_17220 are separated by 65 nucleotides CSW01_17220 and CSW01_17225 are separated by 24 nucleotides
CSW01_17210: CSW01_17210 - MFS transporter, at 532,068 to 533,540
_17210
CSW01_17215: CSW01_17215 - multidrug transporter, at 533,640 to 534,545
_17215
CSW01_17220: CSW01_17220 - phosphonate utilization transcriptional regulator PhnR, at 534,611 to 535,315
_17220
CSW01_17225: CSW01_17225 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 535,340 to 537,118
_17225
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.661 kb on - strand, within CSW01_17210 at 532.661 kb on - strand, within CSW01_17210 at 532.676 kb on + strand, within CSW01_17210 at 532.686 kb on + strand, within CSW01_17210 at 532.760 kb on - strand, within CSW01_17210 at 532.826 kb on + strand, within CSW01_17210 at 532.874 kb on - strand, within CSW01_17210 at 533.003 kb on + strand, within CSW01_17210 at 533.005 kb on + strand, within CSW01_17210 at 533.069 kb on + strand, within CSW01_17210 at 533.241 kb on - strand, within CSW01_17210 at 533.241 kb on - strand, within CSW01_17210 at 533.245 kb on + strand, within CSW01_17210 at 533.245 kb on + strand, within CSW01_17210 at 533.253 kb on - strand, within CSW01_17210 at 533.282 kb on - strand, within CSW01_17210 at 533.339 kb on + strand, within CSW01_17210 at 533.376 kb on - strand, within CSW01_17210 at 533.421 kb on - strand at 533.421 kb on - strand at 533.455 kb on - strand at 533.460 kb on - strand at 533.462 kb on + strand at 533.470 kb on - strand at 533.472 kb on + strand at 533.480 kb on - strand at 533.502 kb on + strand at 533.502 kb on + strand at 533.558 kb on - strand at 533.567 kb on + strand at 533.895 kb on + strand, within CSW01_17215 at 533.997 kb on + strand, within CSW01_17215 at 534.187 kb on + strand, within CSW01_17215 at 534.199 kb on - strand, within CSW01_17215 at 534.206 kb on + strand, within CSW01_17215 at 534.322 kb on - strand, within CSW01_17215 at 534.509 kb on - strand at 534.545 kb on + strand at 534.578 kb on - strand at 534.617 kb on + strand at 534.632 kb on + strand at 534.690 kb on + strand, within CSW01_17220 at 534.705 kb on - strand, within CSW01_17220 at 534.734 kb on + strand, within CSW01_17220 at 534.787 kb on + strand, within CSW01_17220 at 534.802 kb on - strand, within CSW01_17220 at 534.839 kb on - strand, within CSW01_17220 at 534.859 kb on + strand, within CSW01_17220 at 534.874 kb on + strand, within CSW01_17220 at 534.916 kb on + strand, within CSW01_17220 at 535.103 kb on + strand, within CSW01_17220 at 535.172 kb on - strand, within CSW01_17220 at 535.224 kb on + strand, within CSW01_17220 at 535.333 kb on + strand at 535.356 kb on + strand at 535.382 kb on + strand at 535.452 kb on + strand at 535.523 kb on - strand, within CSW01_17225
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 532,661 - CSW01_17210 0.40 +1.0 532,661 - CSW01_17210 0.40 -1.1 532,676 + CSW01_17210 0.41 -1.5 532,686 + CSW01_17210 0.42 +1.5 532,760 - CSW01_17210 0.47 -2.5 532,826 + CSW01_17210 0.51 +1.1 532,874 - CSW01_17210 0.55 +0.3 533,003 + CSW01_17210 0.63 +1.1 533,005 + CSW01_17210 0.64 -0.9 533,069 + CSW01_17210 0.68 -1.0 533,241 - CSW01_17210 0.80 -2.6 533,241 - CSW01_17210 0.80 +0.8 533,245 + CSW01_17210 0.80 -0.5 533,245 + CSW01_17210 0.80 -0.2 533,253 - CSW01_17210 0.80 -1.4 533,282 - CSW01_17210 0.82 +0.2 533,339 + CSW01_17210 0.86 -0.7 533,376 - CSW01_17210 0.89 +1.9 533,421 - +1.3 533,421 - +0.7 533,455 - -0.2 533,460 - -2.8 533,462 + +1.5 533,470 - +0.1 533,472 + -0.3 533,480 - +0.5 533,502 + +0.3 533,502 + +1.2 533,558 - -2.7 533,567 + +0.4 533,895 + CSW01_17215 0.28 -0.5 533,997 + CSW01_17215 0.39 +0.4 534,187 + CSW01_17215 0.60 +0.3 534,199 - CSW01_17215 0.62 -2.6 534,206 + CSW01_17215 0.62 -0.8 534,322 - CSW01_17215 0.75 +0.1 534,509 - -3.2 534,545 + +1.0 534,578 - -2.0 534,617 + +0.7 534,632 + +2.1 534,690 + CSW01_17220 0.11 -2.5 534,705 - CSW01_17220 0.13 +0.9 534,734 + CSW01_17220 0.17 -2.1 534,787 + CSW01_17220 0.25 +1.7 534,802 - CSW01_17220 0.27 -2.1 534,839 - CSW01_17220 0.32 +0.3 534,859 + CSW01_17220 0.35 +0.5 534,874 + CSW01_17220 0.37 +0.0 534,916 + CSW01_17220 0.43 +1.4 535,103 + CSW01_17220 0.70 +0.6 535,172 - CSW01_17220 0.80 -3.7 535,224 + CSW01_17220 0.87 -0.7 535,333 + +0.4 535,356 + -0.4 535,382 + -0.9 535,452 + -0.9 535,523 - CSW01_17225 0.10 -1.7
Or see this region's nucleotide sequence