Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16890 and CSW01_16895 overlap by 11 nucleotides CSW01_16895 and CSW01_16900 are separated by 199 nucleotides CSW01_16900 and CSW01_16905 are separated by 215 nucleotides
CSW01_16890: CSW01_16890 - sensor histidine kinase KdpD, at 467,174 to 468,667
_16890
CSW01_16895: CSW01_16895 - DNA-binding response regulator, at 468,657 to 469,349
_16895
CSW01_16900: CSW01_16900 - twin-arginine translocase TatA/TatE family subunit, at 469,549 to 469,785
_16900
CSW01_16905: CSW01_16905 - DedA family protein, at 470,001 to 470,675
_16905
Position (kb) 469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.609 kb on + strand at 468.777 kb on - strand, within CSW01_16895 at 468.891 kb on - strand, within CSW01_16895 at 468.971 kb on - strand, within CSW01_16895 at 468.994 kb on - strand, within CSW01_16895 at 469.036 kb on + strand, within CSW01_16895 at 469.044 kb on - strand, within CSW01_16895 at 469.268 kb on - strand, within CSW01_16895 at 469.333 kb on - strand at 469.377 kb on + strand at 469.451 kb on - strand at 469.454 kb on + strand at 469.475 kb on - strand at 469.610 kb on - strand, within CSW01_16900 at 469.722 kb on + strand, within CSW01_16900 at 469.822 kb on + strand at 469.914 kb on + strand at 469.914 kb on + strand at 470.084 kb on + strand, within CSW01_16905 at 470.109 kb on - strand, within CSW01_16905 at 470.154 kb on + strand, within CSW01_16905 at 470.195 kb on - strand, within CSW01_16905 at 470.360 kb on + strand, within CSW01_16905 at 470.451 kb on + strand, within CSW01_16905 at 470.720 kb on - strand at 470.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 468,609 + -1.6 468,777 - CSW01_16895 0.17 -0.5 468,891 - CSW01_16895 0.34 -2.7 468,971 - CSW01_16895 0.45 +0.1 468,994 - CSW01_16895 0.49 -1.3 469,036 + CSW01_16895 0.55 +1.7 469,044 - CSW01_16895 0.56 +0.5 469,268 - CSW01_16895 0.88 +1.0 469,333 - +0.1 469,377 + -2.7 469,451 - +1.9 469,454 + -1.0 469,475 - -0.3 469,610 - CSW01_16900 0.26 +0.2 469,722 + CSW01_16900 0.73 +0.1 469,822 + +0.5 469,914 + -0.9 469,914 + +1.4 470,084 + CSW01_16905 0.12 -0.2 470,109 - CSW01_16905 0.16 +0.8 470,154 + CSW01_16905 0.23 +2.4 470,195 - CSW01_16905 0.29 -1.7 470,360 + CSW01_16905 0.53 -0.6 470,451 + CSW01_16905 0.67 -0.2 470,720 - +2.1 470,751 + -0.0
Or see this region's nucleotide sequence