Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16255 and CSW01_16260 are separated by 201 nucleotides CSW01_16260 and CSW01_16265 overlap by 4 nucleotides CSW01_16265 and CSW01_16270 are separated by 104 nucleotides CSW01_16270 and CSW01_16275 are separated by 42 nucleotides CSW01_16275 and CSW01_16280 are separated by 33 nucleotides CSW01_16280 and CSW01_16285 are separated by 66 nucleotides CSW01_16285 and CSW01_16290 overlap by 4 nucleotides
CSW01_16255: CSW01_16255 - hypothetical protein, at 385,206 to 385,631
_16255
CSW01_16260: CSW01_16260 - prevent-host-death family protein, at 385,833 to 386,126
_16260
CSW01_16265: CSW01_16265 - type II toxin-antitoxin system RelE/ParE family toxin, at 386,123 to 386,482
_16265
CSW01_16270: CSW01_16270 - DUF3709 domain-containing protein, at 386,587 to 386,910
_16270
CSW01_16275: CSW01_16275 - hypothetical protein, at 386,953 to 387,132
_16275
CSW01_16280: CSW01_16280 - DUF3465 domain-containing protein, at 387,166 to 387,591
_16280
CSW01_16285: CSW01_16285 - acetyltransferase, at 387,658 to 387,772
_16285
CSW01_16290: CSW01_16290 - DUF1289 domain-containing protein, at 387,769 to 388,002
_16290
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.762 kb on + strand at 385.849 kb on + strand at 385.961 kb on + strand, within CSW01_16260 at 385.968 kb on + strand, within CSW01_16260 at 385.987 kb on + strand, within CSW01_16260 at 385.995 kb on - strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 385.997 kb on + strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.005 kb on - strand, within CSW01_16260 at 386.052 kb on - strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.067 kb on + strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.075 kb on - strand, within CSW01_16260 at 386.111 kb on - strand at 386.141 kb on + strand at 386.141 kb on + strand at 386.149 kb on - strand at 386.149 kb on - strand at 386.149 kb on - strand at 386.176 kb on + strand, within CSW01_16265 at 386.381 kb on - strand, within CSW01_16265 at 386.596 kb on + strand at 386.698 kb on - strand, within CSW01_16270 at 386.698 kb on - strand, within CSW01_16270 at 386.714 kb on + strand, within CSW01_16270 at 386.722 kb on - strand, within CSW01_16270 at 386.722 kb on - strand, within CSW01_16270 at 387.022 kb on - strand, within CSW01_16275 at 387.337 kb on + strand, within CSW01_16280 at 387.755 kb on - strand, within CSW01_16285 at 387.816 kb on + strand, within CSW01_16290
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 385,762 + +0.4 385,849 + +0.7 385,961 + CSW01_16260 0.44 +3.1 385,968 + CSW01_16260 0.46 +1.9 385,987 + CSW01_16260 0.52 +0.7 385,995 - CSW01_16260 0.55 +0.6 385,997 + CSW01_16260 0.56 -0.6 385,997 + CSW01_16260 0.56 -3.0 385,997 + CSW01_16260 0.56 +0.3 385,997 + CSW01_16260 0.56 +0.2 386,005 - CSW01_16260 0.59 -2.7 386,005 - CSW01_16260 0.59 -3.3 386,005 - CSW01_16260 0.59 -0.8 386,052 - CSW01_16260 0.74 -0.8 386,067 + CSW01_16260 0.80 -0.1 386,067 + CSW01_16260 0.80 -0.8 386,067 + CSW01_16260 0.80 -0.1 386,067 + CSW01_16260 0.80 -2.2 386,075 - CSW01_16260 0.82 -2.5 386,075 - CSW01_16260 0.82 +0.8 386,075 - CSW01_16260 0.82 -1.1 386,075 - CSW01_16260 0.82 +0.1 386,111 - -0.1 386,141 + -0.4 386,141 + +0.2 386,149 - -2.6 386,149 - +1.0 386,149 - -1.8 386,176 + CSW01_16265 0.15 +0.2 386,381 - CSW01_16265 0.72 +0.9 386,596 + -2.0 386,698 - CSW01_16270 0.34 +0.3 386,698 - CSW01_16270 0.34 +0.9 386,714 + CSW01_16270 0.39 -0.5 386,722 - CSW01_16270 0.42 +1.8 386,722 - CSW01_16270 0.42 +3.7 387,022 - CSW01_16275 0.38 -0.3 387,337 + CSW01_16280 0.40 -1.2 387,755 - CSW01_16285 0.84 -2.7 387,816 + CSW01_16290 0.20 +0.4
Or see this region's nucleotide sequence