Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15470 and CSW01_15475 are separated by 97 nucleotides CSW01_15475 and CSW01_15480 are separated by 24 nucleotides CSW01_15480 and CSW01_15485 are separated by 41 nucleotides CSW01_15485 and CSW01_15490 are separated by 40 nucleotides CSW01_15490 and CSW01_15495 are separated by 295 nucleotides
CSW01_15470: CSW01_15470 - NAD(P)-dependent oxidoreductase, at 314,276 to 315,028
_15470
CSW01_15475: CSW01_15475 - hypothetical protein, at 315,126 to 315,305
_15475
CSW01_15480: CSW01_15480 - DUF645 domain-containing protein, at 315,330 to 315,512
_15480
CSW01_15485: CSW01_15485 - hypothetical protein, at 315,554 to 315,649
_15485
CSW01_15490: CSW01_15490 - hypothetical protein, at 315,690 to 316,094
_15490
CSW01_15495: CSW01_15495 - DUF645 domain-containing protein, at 316,390 to 316,572
_15495
Position (kb) 315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.481 kb on + strand, within CSW01_15470 at 314.505 kb on + strand, within CSW01_15470 at 314.696 kb on - strand, within CSW01_15470 at 314.766 kb on - strand, within CSW01_15470 at 314.797 kb on - strand, within CSW01_15470 at 314.843 kb on + strand, within CSW01_15470 at 314.843 kb on + strand, within CSW01_15470 at 314.882 kb on - strand, within CSW01_15470 at 315.050 kb on - strand at 315.333 kb on - strand at 315.343 kb on - strand at 315.350 kb on - strand, within CSW01_15480 at 315.364 kb on - strand, within CSW01_15480 at 315.650 kb on + strand at 316.315 kb on + strand at 316.361 kb on + strand at 316.393 kb on - strand at 316.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 314,481 + CSW01_15470 0.27 +1.5 314,505 + CSW01_15470 0.30 -1.7 314,696 - CSW01_15470 0.56 -1.8 314,766 - CSW01_15470 0.65 +1.2 314,797 - CSW01_15470 0.69 -0.1 314,843 + CSW01_15470 0.75 -3.2 314,843 + CSW01_15470 0.75 +1.1 314,882 - CSW01_15470 0.80 +0.6 315,050 - -0.3 315,333 - +0.9 315,343 - +0.4 315,350 - CSW01_15480 0.11 -2.4 315,364 - CSW01_15480 0.19 +0.1 315,650 + +0.3 316,315 + +0.1 316,361 + +2.5 316,393 - -0.0 316,400 - +0.9
Or see this region's nucleotide sequence