Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14790

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14785 and CSW01_14790 are separated by 146 nucleotidesCSW01_14790 and CSW01_14795 are separated by 71 nucleotides CSW01_14785: CSW01_14785 - proton-conducting membrane transporter, at 172,959 to 175,634 _14785 CSW01_14790: CSW01_14790 - hypothetical protein, at 175,781 to 175,981 _14790 CSW01_14795: CSW01_14795 - universal stress protein, at 176,053 to 176,994 _14795 Position (kb) 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 174.827 kb on + strand, within CSW01_14785at 174.828 kb on - strand, within CSW01_14785at 174.849 kb on + strand, within CSW01_14785at 174.908 kb on - strand, within CSW01_14785at 174.944 kb on + strand, within CSW01_14785at 174.949 kb on + strand, within CSW01_14785at 174.964 kb on + strand, within CSW01_14785at 175.020 kb on - strand, within CSW01_14785at 175.059 kb on - strand, within CSW01_14785at 175.114 kb on + strand, within CSW01_14785at 175.170 kb on - strand, within CSW01_14785at 175.247 kb on + strand, within CSW01_14785at 175.254 kb on - strand, within CSW01_14785at 175.257 kb on + strand, within CSW01_14785at 175.309 kb on - strand, within CSW01_14785at 175.331 kb on + strand, within CSW01_14785at 175.339 kb on - strand, within CSW01_14785at 175.339 kb on - strand, within CSW01_14785at 175.542 kb on + strandat 175.579 kb on + strandat 175.614 kb on - strandat 175.733 kb on - strandat 175.803 kb on + strand, within CSW01_14790at 175.811 kb on - strand, within CSW01_14790at 175.811 kb on - strand, within CSW01_14790at 175.816 kb on + strand, within CSW01_14790at 175.869 kb on + strand, within CSW01_14790at 175.901 kb on - strand, within CSW01_14790at 175.919 kb on + strand, within CSW01_14790at 175.919 kb on + strand, within CSW01_14790at 175.920 kb on + strand, within CSW01_14790at 175.920 kb on + strand, within CSW01_14790at 175.927 kb on - strand, within CSW01_14790at 175.927 kb on - strand, within CSW01_14790at 175.936 kb on - strand, within CSW01_14790at 175.962 kb on + strandat 176.001 kb on + strandat 176.029 kb on - strandat 176.088 kb on + strandat 176.254 kb on + strand, within CSW01_14795at 176.270 kb on - strand, within CSW01_14795at 176.311 kb on - strand, within CSW01_14795at 176.438 kb on + strand, within CSW01_14795at 176.479 kb on + strand, within CSW01_14795at 176.614 kb on + strand, within CSW01_14795at 176.617 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.622 kb on - strand, within CSW01_14795at 176.630 kb on - strand, within CSW01_14795at 176.637 kb on + strand, within CSW01_14795at 176.673 kb on + strand, within CSW01_14795at 176.783 kb on - strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.790 kb on + strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.798 kb on - strand, within CSW01_14795at 176.820 kb on - strand, within CSW01_14795at 176.821 kb on + strand, within CSW01_14795at 176.835 kb on + strand, within CSW01_14795at 176.843 kb on - strand, within CSW01_14795at 176.900 kb on + strandat 176.956 kb on + strandat 176.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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174,827 + CSW01_14785 0.70 -0.6
174,828 - CSW01_14785 0.70 -1.8
174,849 + CSW01_14785 0.71 +0.4
174,908 - CSW01_14785 0.73 +0.0
174,944 + CSW01_14785 0.74 +1.7
174,949 + CSW01_14785 0.74 +0.4
174,964 + CSW01_14785 0.75 -0.1
175,020 - CSW01_14785 0.77 -0.4
175,059 - CSW01_14785 0.78 +1.7
175,114 + CSW01_14785 0.81 -1.4
175,170 - CSW01_14785 0.83 +0.6
175,247 + CSW01_14785 0.86 -3.1
175,254 - CSW01_14785 0.86 -0.3
175,257 + CSW01_14785 0.86 -2.8
175,309 - CSW01_14785 0.88 -0.4
175,331 + CSW01_14785 0.89 +1.4
175,339 - CSW01_14785 0.89 +0.5
175,339 - CSW01_14785 0.89 -2.7
175,542 + +1.7
175,579 + +0.4
175,614 - +1.6
175,733 - -3.9
175,803 + CSW01_14790 0.11 -0.4
175,811 - CSW01_14790 0.15 +1.0
175,811 - CSW01_14790 0.15 +1.7
175,816 + CSW01_14790 0.17 -0.8
175,869 + CSW01_14790 0.44 +0.4
175,901 - CSW01_14790 0.60 +0.8
175,919 + CSW01_14790 0.69 -2.7
175,919 + CSW01_14790 0.69 -0.6
175,920 + CSW01_14790 0.69 +2.5
175,920 + CSW01_14790 0.69 -2.2
175,927 - CSW01_14790 0.73 +0.8
175,927 - CSW01_14790 0.73 -0.4
175,936 - CSW01_14790 0.77 -1.8
175,962 + -0.5
176,001 + -1.9
176,029 - -0.3
176,088 + -2.9
176,254 + CSW01_14795 0.21 -0.4
176,270 - CSW01_14795 0.23 -3.1
176,311 - CSW01_14795 0.27 +1.3
176,438 + CSW01_14795 0.41 +0.3
176,479 + CSW01_14795 0.45 -0.1
176,614 + CSW01_14795 0.60 -1.2
176,617 - CSW01_14795 0.60 +0.0
176,622 - CSW01_14795 0.60 +1.7
176,622 - CSW01_14795 0.60 -0.6
176,630 - CSW01_14795 0.61 -1.1
176,637 + CSW01_14795 0.62 +2.0
176,673 + CSW01_14795 0.66 -0.3
176,783 - CSW01_14795 0.77 +0.2
176,790 + CSW01_14795 0.78 -1.2
176,790 + CSW01_14795 0.78 -2.7
176,790 + CSW01_14795 0.78 -1.4
176,790 + CSW01_14795 0.78 +0.3
176,790 + CSW01_14795 0.78 -1.6
176,790 + CSW01_14795 0.78 +1.5
176,790 + CSW01_14795 0.78 +1.2
176,790 + CSW01_14795 0.78 -0.3
176,790 + CSW01_14795 0.78 +0.1
176,798 - CSW01_14795 0.79 +0.3
176,798 - CSW01_14795 0.79 +0.1
176,798 - CSW01_14795 0.79 -0.2
176,798 - CSW01_14795 0.79 -0.2
176,798 - CSW01_14795 0.79 +1.1
176,798 - CSW01_14795 0.79 +0.1
176,820 - CSW01_14795 0.81 -2.7
176,821 + CSW01_14795 0.82 -1.4
176,835 + CSW01_14795 0.83 +0.4
176,843 - CSW01_14795 0.84 -2.7
176,900 + -1.8
176,956 + +0.7
176,964 - +1.4

Or see this region's nucleotide sequence