Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14630

Experiment: ICP1_phage_0.23_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep2
136,675	+		CSW01_14620	0.48	-0.1
136,680	+		CSW01_14620	0.49	+0.2
136,680	+		CSW01_14620	0.49	-3.1
136,688	-		CSW01_14620	0.50	+0.2
136,703	-		CSW01_14620	0.51	-0.8
136,768	+		CSW01_14620	0.56	+1.2
136,776	-		CSW01_14620	0.56	-2.6
136,866	-		CSW01_14620	0.64	-2.3
136,983	-		CSW01_14620	0.73	+0.3
136,996	-		CSW01_14620	0.74	+1.4
136,997	-		CSW01_14620	0.74	-1.6
137,136	-		CSW01_14620	0.85	-3.3
137,144	-		CSW01_14620	0.86	-0.4
137,165	-		CSW01_14620	0.87	-0.3
137,189	+		CSW01_14620	0.89	-0.7
137,189	+		CSW01_14620	0.89	+0.3
137,189	+		CSW01_14620	0.89	+2.2
137,197	-		CSW01_14620	0.90	-2.6
137,197	-		CSW01_14620	0.90	+0.0
137,197	-		CSW01_14620	0.90	-0.3
137,199	+		CSW01_14620	0.90	-0.0
137,199	+		CSW01_14620	0.90	+0.5
137,207	-				+1.4
137,207	-				-2.1
137,342	-				-1.6
137,408	+		CSW01_14625	0.13	+1.5
137,417	-		CSW01_14625	0.16	-1.3
137,606	+				+1.2
137,614	+				+1.5
137,682	+				+0.1
137,683	-				-0.5
137,700	-				+0.2
137,700	-				-1.2
137,717	+				+1.3
137,740	+				-2.0
137,820	-				-0.6
137,850	-				-1.7
137,977	-		CSW01_14630	0.13	+0.4
138,015	+		CSW01_14630	0.14	+0.9
138,046	-		CSW01_14630	0.15	-0.6
138,073	+		CSW01_14630	0.16	-0.5
138,101	-		CSW01_14630	0.17	-2.4
138,182	+		CSW01_14630	0.20	-0.4
138,185	-		CSW01_14630	0.20	+0.2
138,220	+		CSW01_14630	0.21	-0.4
138,249	-		CSW01_14630	0.22	+0.4
138,249	-		CSW01_14630	0.22	-2.5
138,270	-		CSW01_14630	0.23	-3.0
138,317	-		CSW01_14630	0.24	+0.0
138,317	-		CSW01_14630	0.24	+1.4
138,317	-		CSW01_14630	0.24	+1.8
138,328	+		CSW01_14630	0.25	+2.7
138,328	+		CSW01_14630	0.25	-0.3
138,328	+		CSW01_14630	0.25	+0.4
138,328	+		CSW01_14630	0.25	+0.6
138,328	+		CSW01_14630	0.25	+0.9
138,336	-		CSW01_14630	0.25	-0.1
138,336	-		CSW01_14630	0.25	-2.6
138,336	-		CSW01_14630	0.25	-1.3
138,336	-		CSW01_14630	0.25	+0.2
138,336	-		CSW01_14630	0.25	-2.4
138,336	-		CSW01_14630	0.25	-3.2
138,471	-		CSW01_14630	0.29	-3.9
138,479	+		CSW01_14630	0.29	+0.2
138,479	+		CSW01_14630	0.29	-0.7
138,479	+		CSW01_14630	0.29	-1.7
138,479	+		CSW01_14630	0.29	-0.2
138,495	-		CSW01_14630	0.30	+0.2
138,588	-		CSW01_14630	0.33	-1.6
138,673	+		CSW01_14630	0.36	-0.3
138,673	+		CSW01_14630	0.36	-0.4
138,681	-		CSW01_14630	0.36	-0.8
138,681	-		CSW01_14630	0.36	-0.7
138,719	-		CSW01_14630	0.37	+0.7
139,028	+		CSW01_14630	0.47	+0.8
139,028	+		CSW01_14630	0.47	-0.5
139,030	-		CSW01_14630	0.48	+1.6
139,030	-		CSW01_14630	0.48	+0.5
139,157	-		CSW01_14630	0.52	+2.3
139,225	-		CSW01_14630	0.54	+1.4
139,225	-		CSW01_14630	0.54	+0.3
139,274	-		CSW01_14630	0.56	-0.1
139,318	-		CSW01_14630	0.57	+0.7
139,440	+		CSW01_14630	0.61	+1.1
139,474	+		CSW01_14630	0.62	+0.8
139,504	+		CSW01_14630	0.63	+0.6
139,519	+		CSW01_14630	0.64	-0.5
139,519	+		CSW01_14630	0.64	-0.4
139,519	+		CSW01_14630	0.64	+0.7
139,549	-		CSW01_14630	0.65	-0.4
139,587	+		CSW01_14630	0.66	+0.7
139,606	-		CSW01_14630	0.66	-2.2
139,630	-		CSW01_14630	0.67	-0.1
139,699	+		CSW01_14630	0.69	+0.6
139,699	+		CSW01_14630	0.69	-3.8
139,760	+		CSW01_14630	0.71	-0.9
139,785	-		CSW01_14630	0.72	+0.6
139,785	-		CSW01_14630	0.72	-0.0
139,838	+		CSW01_14630	0.74	-0.1
139,846	-		CSW01_14630	0.74	-3.2
139,860	+		CSW01_14630	0.75	+2.0
139,898	-		CSW01_14630	0.76	-0.4
139,935	-		CSW01_14630	0.77	+0.2
139,937	+		CSW01_14630	0.77	-2.6
139,937	+		CSW01_14630	0.77	+2.1
139,937	+		CSW01_14630	0.77	+0.3
139,945	-		CSW01_14630	0.77	-3.5
139,954	-		CSW01_14630	0.78	+0.2
139,956	+		CSW01_14630	0.78	+0.5
139,982	+		CSW01_14630	0.79	+1.1
139,982	+		CSW01_14630	0.79	-1.4
139,983	-		CSW01_14630	0.79	-0.1
139,990	-		CSW01_14630	0.79	-2.3
139,990	-		CSW01_14630	0.79	+1.1
139,990	-		CSW01_14630	0.79	-3.1
140,002	-		CSW01_14630	0.79	+0.5
140,073	+		CSW01_14630	0.82	+1.3
140,073	+		CSW01_14630	0.82	-0.0
140,080	+		CSW01_14630	0.82	-1.4
140,081	-		CSW01_14630	0.82	+1.1
140,107	+		CSW01_14630	0.83	+0.5
140,202	+		CSW01_14630	0.86	+0.1
140,242	+		CSW01_14630	0.87	+1.1
140,242	+		CSW01_14630	0.87	+1.4
140,250	-		CSW01_14630	0.87	+0.8
140,329	+				+0.2
140,336	-				-0.9
140,377	-				-1.0
140,377	-				-1.3
140,378	+				-2.8
140,388	+				+1.1
140,388	+				+0.5
140,388	+				+0.2
140,394	+				-1.3
140,394	+				+0.5
140,394	+				-2.6
140,394	+				+0.7
140,394	+				+0.1
140,394	+				-0.4
140,394	+				-4.1
140,396	-				-1.2
140,396	-				-3.7
140,396	-				+1.7
140,397	-				-1.8
140,402	-				+1.6
140,402	-				-3.0
140,402	-				-3.8
140,407	-				-1.6
140,407	-				-0.8
140,468	-				+0.6
140,503	-				+0.1
140,506	+				+0.3
140,514	-				+0.2
140,514	-				+0.3
140,520	+				-0.8
140,530	+				-3.4
140,972	+				+0.5
140,991	-				-0.2
141,158	-				+0.7
141,160	-				+1.1
141,197	+		CSW01_14640	0.20	-0.0
141,197	+		CSW01_14640	0.20	-3.5
141,197	+		CSW01_14640	0.20	-1.8
141,197	+		CSW01_14640	0.20	-1.1
141,197	+		CSW01_14640	0.20	+0.6
141,197	+		CSW01_14640	0.20	-3.7
141,197	+		CSW01_14640	0.20	-0.5
141,198	-		CSW01_14640	0.20	-1.7
141,205	-		CSW01_14640	0.23	-0.1
141,205	-		CSW01_14640	0.23	-0.5
141,205	-		CSW01_14640	0.23	+0.5
141,205	-		CSW01_14640	0.23	-0.9
141,205	-		CSW01_14640	0.23	+1.0
141,205	-		CSW01_14640	0.23	-0.1
141,242	+		CSW01_14640	0.37	-0.2
141,265	-		CSW01_14640	0.46	+0.7
141,291	-		CSW01_14640	0.56	+0.1
141,348	-		CSW01_14640	0.78	-0.3
141,374	-		CSW01_14640	0.88	-3.4
141,473	-				+0.5
141,473	-				-2.0
141,490	+				+1.4
141,557	-				-0.0