Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14540

Experiment: ICP1_phage_0.23_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14535 and CSW01_14540 are separated by 771 nucleotidesCSW01_14540 and CSW01_14545 overlap by 17 nucleotides CSW01_14535: CSW01_14535 - RluA family pseudouridine synthase, at 112,689 to 114,368 _14535 CSW01_14540: CSW01_14540 - hypothetical protein, at 115,140 to 115,424 _14540 CSW01_14545: CSW01_14545 - sel1 repeat family protein, at 115,408 to 116,412 _14545 Position (kb) 115 116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 114.144 kb on + strand, within CSW01_14535at 114.333 kb on + strandat 114.359 kb on + strandat 114.359 kb on + strandat 114.367 kb on - strandat 114.367 kb on - strandat 114.391 kb on - strandat 114.407 kb on - strandat 114.455 kb on + strandat 114.456 kb on - strandat 114.469 kb on + strandat 114.484 kb on + strandat 114.547 kb on + strandat 114.574 kb on - strandat 114.594 kb on + strandat 114.602 kb on - strandat 114.604 kb on + strandat 114.636 kb on - strandat 114.717 kb on + strandat 114.759 kb on - strandat 114.811 kb on - strandat 115.005 kb on - strandat 115.010 kb on - strandat 115.024 kb on + strandat 115.051 kb on - strandat 115.053 kb on + strandat 115.053 kb on + strandat 115.061 kb on - strandat 115.136 kb on + strandat 115.238 kb on + strand, within CSW01_14540at 115.246 kb on - strand, within CSW01_14540at 115.272 kb on - strand, within CSW01_14540at 115.289 kb on - strand, within CSW01_14540at 115.321 kb on + strand, within CSW01_14540at 115.368 kb on - strand, within CSW01_14540at 115.369 kb on - strand, within CSW01_14540at 115.586 kb on + strand, within CSW01_14545at 115.602 kb on + strand, within CSW01_14545at 115.655 kb on + strand, within CSW01_14545at 115.746 kb on + strand, within CSW01_14545at 115.749 kb on + strand, within CSW01_14545at 115.754 kb on + strand, within CSW01_14545at 115.754 kb on + strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.757 kb on - strand, within CSW01_14545at 115.762 kb on - strand, within CSW01_14545at 115.762 kb on - strand, within CSW01_14545at 115.814 kb on + strand, within CSW01_14545at 115.814 kb on + strand, within CSW01_14545at 115.820 kb on + strand, within CSW01_14545at 115.822 kb on - strand, within CSW01_14545at 115.822 kb on - strand, within CSW01_14545at 115.846 kb on + strand, within CSW01_14545at 115.868 kb on + strand, within CSW01_14545at 115.868 kb on + strand, within CSW01_14545at 115.869 kb on + strand, within CSW01_14545at 115.869 kb on + strand, within CSW01_14545at 115.871 kb on - strand, within CSW01_14545at 115.871 kb on - strand, within CSW01_14545at 115.876 kb on - strand, within CSW01_14545at 115.877 kb on - strand, within CSW01_14545at 115.877 kb on - strand, within CSW01_14545at 115.907 kb on + strand, within CSW01_14545at 115.925 kb on + strand, within CSW01_14545at 115.932 kb on - strand, within CSW01_14545at 115.975 kb on - strand, within CSW01_14545at 115.978 kb on + strand, within CSW01_14545at 116.013 kb on + strand, within CSW01_14545at 116.040 kb on - strand, within CSW01_14545at 116.042 kb on - strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.114 kb on + strand, within CSW01_14545at 116.116 kb on + strand, within CSW01_14545at 116.119 kb on + strand, within CSW01_14545at 116.122 kb on - strand, within CSW01_14545at 116.122 kb on - strand, within CSW01_14545at 116.203 kb on + strand, within CSW01_14545at 116.203 kb on + strand, within CSW01_14545at 116.212 kb on - strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.214 kb on + strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.222 kb on - strand, within CSW01_14545at 116.228 kb on - strand, within CSW01_14545at 116.255 kb on - strand, within CSW01_14545at 116.263 kb on - strand, within CSW01_14545at 116.356 kb on - strandat 116.415 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
remove
114,144 + CSW01_14535 0.87 -0.1
114,333 + -0.7
114,359 + -1.3
114,359 + -1.8
114,367 - +1.3
114,367 - +1.3
114,391 - +0.9
114,407 - +1.1
114,455 + -1.9
114,456 - +1.1
114,469 + +0.5
114,484 + -1.8
114,547 + -1.2
114,574 - +0.5
114,594 + +1.9
114,602 - +0.6
114,604 + +1.0
114,636 - +0.8
114,717 + +0.0
114,759 - +0.1
114,811 - -1.2
115,005 - -1.2
115,010 - +0.3
115,024 + -1.5
115,051 - +0.6
115,053 + +0.9
115,053 + -1.5
115,061 - +1.5
115,136 + -2.7
115,238 + CSW01_14540 0.34 -3.8
115,246 - CSW01_14540 0.37 -1.5
115,272 - CSW01_14540 0.46 +0.0
115,289 - CSW01_14540 0.52 -0.8
115,321 + CSW01_14540 0.64 -0.7
115,368 - CSW01_14540 0.80 -1.9
115,369 - CSW01_14540 0.80 +0.9
115,586 + CSW01_14545 0.18 +1.4
115,602 + CSW01_14545 0.19 +1.1
115,655 + CSW01_14545 0.25 +0.9
115,746 + CSW01_14545 0.34 -1.2
115,749 + CSW01_14545 0.34 -1.2
115,754 + CSW01_14545 0.34 +1.3
115,754 + CSW01_14545 0.34 +1.2
115,757 - CSW01_14545 0.35 -0.3
115,757 - CSW01_14545 0.35 +1.6
115,757 - CSW01_14545 0.35 +0.3
115,757 - CSW01_14545 0.35 +1.2
115,757 - CSW01_14545 0.35 +1.0
115,757 - CSW01_14545 0.35 -0.1
115,762 - CSW01_14545 0.35 -1.2
115,762 - CSW01_14545 0.35 -1.2
115,814 + CSW01_14545 0.40 -2.1
115,814 + CSW01_14545 0.40 -1.9
115,820 + CSW01_14545 0.41 -2.2
115,822 - CSW01_14545 0.41 -2.3
115,822 - CSW01_14545 0.41 +0.6
115,846 + CSW01_14545 0.44 -3.7
115,868 + CSW01_14545 0.46 -0.0
115,868 + CSW01_14545 0.46 -2.5
115,869 + CSW01_14545 0.46 -1.5
115,869 + CSW01_14545 0.46 -1.2
115,871 - CSW01_14545 0.46 +0.0
115,871 - CSW01_14545 0.46 +1.0
115,876 - CSW01_14545 0.47 -1.4
115,877 - CSW01_14545 0.47 -0.7
115,877 - CSW01_14545 0.47 +0.2
115,907 + CSW01_14545 0.50 +0.4
115,925 + CSW01_14545 0.51 -3.3
115,932 - CSW01_14545 0.52 -0.8
115,975 - CSW01_14545 0.56 -2.8
115,978 + CSW01_14545 0.57 +0.1
116,013 + CSW01_14545 0.60 -1.6
116,040 - CSW01_14545 0.63 +0.2
116,042 - CSW01_14545 0.63 -0.5
116,114 + CSW01_14545 0.70 +1.8
116,114 + CSW01_14545 0.70 +0.8
116,114 + CSW01_14545 0.70 -1.5
116,116 + CSW01_14545 0.70 +1.6
116,119 + CSW01_14545 0.71 -1.8
116,122 - CSW01_14545 0.71 +1.4
116,122 - CSW01_14545 0.71 -0.4
116,203 + CSW01_14545 0.79 +0.3
116,203 + CSW01_14545 0.79 -0.5
116,212 - CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.8
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.1
116,214 + CSW01_14545 0.80 +1.3
116,214 + CSW01_14545 0.80 -0.3
116,214 + CSW01_14545 0.80 -2.8
116,214 + CSW01_14545 0.80 +0.6
116,214 + CSW01_14545 0.80 -1.0
116,214 + CSW01_14545 0.80 +2.2
116,214 + CSW01_14545 0.80 -0.3
116,214 + CSW01_14545 0.80 -2.9
116,214 + CSW01_14545 0.80 +0.4
116,214 + CSW01_14545 0.80 +0.7
116,214 + CSW01_14545 0.80 -0.1
116,214 + CSW01_14545 0.80 +0.0
116,214 + CSW01_14545 0.80 -0.0
116,214 + CSW01_14545 0.80 -1.8
116,214 + CSW01_14545 0.80 +0.6
116,214 + CSW01_14545 0.80 +0.8
116,222 - CSW01_14545 0.81 +1.3
116,222 - CSW01_14545 0.81 -0.0
116,222 - CSW01_14545 0.81 -0.0
116,222 - CSW01_14545 0.81 -1.9
116,222 - CSW01_14545 0.81 +0.6
116,222 - CSW01_14545 0.81 -1.7
116,222 - CSW01_14545 0.81 -1.0
116,222 - CSW01_14545 0.81 +1.2
116,222 - CSW01_14545 0.81 +1.6
116,222 - CSW01_14545 0.81 -3.4
116,222 - CSW01_14545 0.81 +0.6
116,222 - CSW01_14545 0.81 +1.6
116,222 - CSW01_14545 0.81 -0.4
116,222 - CSW01_14545 0.81 +4.4
116,222 - CSW01_14545 0.81 +0.7
116,222 - CSW01_14545 0.81 +0.2
116,222 - CSW01_14545 0.81 -2.5
116,228 - CSW01_14545 0.82 -0.5
116,255 - CSW01_14545 0.84 -1.8
116,263 - CSW01_14545 0.85 -3.3
116,356 - -1.4
116,415 - -1.6

Or see this region's nucleotide sequence