Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14535

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14530 and CSW01_14535 are separated by 41 nucleotidesCSW01_14535 and CSW01_14540 are separated by 771 nucleotides CSW01_14530: CSW01_14530 - SulP family inorganic anion transporter, at 110,869 to 112,647 _14530 CSW01_14535: CSW01_14535 - RluA family pseudouridine synthase, at 112,689 to 114,368 _14535 CSW01_14540: CSW01_14540 - hypothetical protein, at 115,140 to 115,424 _14540 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 111.739 kb on - strand, within CSW01_14530at 111.797 kb on + strand, within CSW01_14530at 111.805 kb on - strand, within CSW01_14530at 111.963 kb on - strand, within CSW01_14530at 111.971 kb on + strand, within CSW01_14530at 112.050 kb on - strand, within CSW01_14530at 112.060 kb on + strand, within CSW01_14530at 112.060 kb on + strand, within CSW01_14530at 112.068 kb on - strand, within CSW01_14530at 112.068 kb on - strand, within CSW01_14530at 112.170 kb on + strand, within CSW01_14530at 112.259 kb on + strand, within CSW01_14530at 112.303 kb on + strand, within CSW01_14530at 112.366 kb on + strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.369 kb on - strand, within CSW01_14530at 112.439 kb on - strand, within CSW01_14530at 112.454 kb on + strand, within CSW01_14530at 112.474 kb on - strandat 112.555 kb on - strandat 112.555 kb on - strandat 112.573 kb on + strandat 112.588 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.714 kb on + strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.722 kb on - strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.729 kb on + strandat 112.737 kb on - strandat 112.737 kb on - strandat 112.737 kb on - strandat 112.876 kb on + strand, within CSW01_14535at 112.894 kb on + strand, within CSW01_14535at 112.939 kb on + strand, within CSW01_14535at 113.140 kb on - strand, within CSW01_14535at 113.213 kb on - strand, within CSW01_14535at 113.257 kb on + strand, within CSW01_14535at 113.265 kb on - strand, within CSW01_14535at 113.303 kb on + strand, within CSW01_14535at 113.304 kb on + strand, within CSW01_14535at 113.304 kb on + strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.312 kb on - strand, within CSW01_14535at 113.404 kb on + strand, within CSW01_14535at 113.412 kb on - strand, within CSW01_14535at 113.412 kb on - strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.452 kb on + strand, within CSW01_14535at 113.462 kb on + strand, within CSW01_14535at 113.529 kb on + strand, within CSW01_14535at 113.660 kb on - strand, within CSW01_14535at 113.678 kb on + strand, within CSW01_14535at 113.712 kb on - strand, within CSW01_14535at 113.740 kb on - strand, within CSW01_14535at 113.804 kb on - strand, within CSW01_14535at 113.804 kb on - strand, within CSW01_14535at 113.900 kb on + strand, within CSW01_14535at 113.900 kb on + strand, within CSW01_14535at 113.908 kb on - strand, within CSW01_14535at 113.935 kb on - strand, within CSW01_14535at 113.935 kb on - strand, within CSW01_14535at 114.090 kb on + strand, within CSW01_14535at 114.125 kb on - strand, within CSW01_14535at 114.133 kb on - strand, within CSW01_14535at 114.135 kb on + strand, within CSW01_14535at 114.144 kb on + strand, within CSW01_14535at 114.333 kb on + strandat 114.359 kb on + strandat 114.359 kb on + strandat 114.367 kb on - strandat 114.367 kb on - strandat 114.391 kb on - strandat 114.407 kb on - strandat 114.455 kb on + strandat 114.456 kb on - strandat 114.469 kb on + strandat 114.484 kb on + strandat 114.547 kb on + strandat 114.574 kb on - strandat 114.594 kb on + strandat 114.602 kb on - strandat 114.604 kb on + strandat 114.636 kb on - strandat 114.717 kb on + strandat 114.759 kb on - strandat 114.811 kb on - strandat 115.005 kb on - strandat 115.010 kb on - strandat 115.024 kb on + strandat 115.051 kb on - strandat 115.053 kb on + strandat 115.053 kb on + strandat 115.061 kb on - strandat 115.136 kb on + strandat 115.238 kb on + strand, within CSW01_14540at 115.246 kb on - strand, within CSW01_14540at 115.272 kb on - strand, within CSW01_14540at 115.289 kb on - strand, within CSW01_14540at 115.321 kb on + strand, within CSW01_14540at 115.368 kb on - strand, within CSW01_14540

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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111,739 - CSW01_14530 0.49 -1.2
111,797 + CSW01_14530 0.52 -0.9
111,805 - CSW01_14530 0.53 +0.7
111,963 - CSW01_14530 0.61 -0.4
111,971 + CSW01_14530 0.62 +0.4
112,050 - CSW01_14530 0.66 -1.3
112,060 + CSW01_14530 0.67 -2.9
112,060 + CSW01_14530 0.67 -0.7
112,068 - CSW01_14530 0.67 +0.3
112,068 - CSW01_14530 0.67 -1.6
112,170 + CSW01_14530 0.73 -0.8
112,259 + CSW01_14530 0.78 -1.5
112,303 + CSW01_14530 0.81 -1.4
112,366 + CSW01_14530 0.84 -0.2
112,369 - CSW01_14530 0.84 -0.6
112,369 - CSW01_14530 0.84 -0.5
112,369 - CSW01_14530 0.84 -0.2
112,439 - CSW01_14530 0.88 -0.4
112,454 + CSW01_14530 0.89 +0.2
112,474 - -0.6
112,555 - -2.1
112,555 - -3.1
112,573 + -1.0
112,588 + +0.6
112,714 + +0.1
112,714 + -0.7
112,714 + +0.9
112,714 + +0.3
112,714 + -2.1
112,714 + +0.8
112,714 + +1.5
112,722 - +0.2
112,722 - -1.1
112,722 - +0.6
112,722 - +0.2
112,729 + -3.3
112,729 + -1.1
112,729 + +1.8
112,729 + -2.0
112,729 + -2.8
112,729 + +0.3
112,737 - +1.0
112,737 - -2.3
112,737 - +2.1
112,876 + CSW01_14535 0.11 -0.7
112,894 + CSW01_14535 0.12 -0.4
112,939 + CSW01_14535 0.15 +2.0
113,140 - CSW01_14535 0.27 -0.6
113,213 - CSW01_14535 0.31 -2.4
113,257 + CSW01_14535 0.34 -2.0
113,265 - CSW01_14535 0.34 -0.8
113,303 + CSW01_14535 0.37 -1.4
113,304 + CSW01_14535 0.37 -1.1
113,304 + CSW01_14535 0.37 +0.2
113,312 - CSW01_14535 0.37 -2.6
113,312 - CSW01_14535 0.37 +1.9
113,312 - CSW01_14535 0.37 -1.6
113,404 + CSW01_14535 0.43 -0.0
113,412 - CSW01_14535 0.43 +0.8
113,412 - CSW01_14535 0.43 -0.9
113,452 + CSW01_14535 0.45 -0.3
113,452 + CSW01_14535 0.45 -2.3
113,452 + CSW01_14535 0.45 +1.1
113,462 + CSW01_14535 0.46 -1.1
113,529 + CSW01_14535 0.50 -1.6
113,660 - CSW01_14535 0.58 +0.2
113,678 + CSW01_14535 0.59 -0.1
113,712 - CSW01_14535 0.61 -0.1
113,740 - CSW01_14535 0.63 +0.5
113,804 - CSW01_14535 0.66 -2.2
113,804 - CSW01_14535 0.66 +0.1
113,900 + CSW01_14535 0.72 -3.3
113,900 + CSW01_14535 0.72 +3.3
113,908 - CSW01_14535 0.73 -1.9
113,935 - CSW01_14535 0.74 -0.3
113,935 - CSW01_14535 0.74 -0.1
114,090 + CSW01_14535 0.83 -2.8
114,125 - CSW01_14535 0.85 -1.4
114,133 - CSW01_14535 0.86 +0.7
114,135 + CSW01_14535 0.86 -0.5
114,144 + CSW01_14535 0.87 -0.1
114,333 + -0.7
114,359 + -1.3
114,359 + -1.8
114,367 - +1.3
114,367 - +1.3
114,391 - +0.9
114,407 - +1.1
114,455 + -1.9
114,456 - +1.1
114,469 + +0.5
114,484 + -1.8
114,547 + -1.2
114,574 - +0.5
114,594 + +1.9
114,602 - +0.6
114,604 + +1.0
114,636 - +0.8
114,717 + +0.0
114,759 - +0.1
114,811 - -1.2
115,005 - -1.2
115,010 - +0.3
115,024 + -1.5
115,051 - +0.6
115,053 + +0.9
115,053 + -1.5
115,061 - +1.5
115,136 + -2.7
115,238 + CSW01_14540 0.34 -3.8
115,246 - CSW01_14540 0.37 -1.5
115,272 - CSW01_14540 0.46 +0.0
115,289 - CSW01_14540 0.52 -0.8
115,321 + CSW01_14540 0.64 -0.7
115,368 - CSW01_14540 0.80 -1.9

Or see this region's nucleotide sequence