Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14515

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14510 and CSW01_14515 are separated by 36 nucleotidesCSW01_14515 and CSW01_14520 overlap by 1 nucleotides CSW01_14510: CSW01_14510 - oxidoreductase, at 106,849 to 107,889 _14510 CSW01_14515: CSW01_14515 - rhodanese-like domain-containing protein, at 107,926 to 108,297 _14515 CSW01_14520: CSW01_14520 - EAL domain-containing protein, at 108,297 to 109,853 _14520 Position (kb) 107 108 109Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.943 kb on + strandat 106.951 kb on - strandat 106.951 kb on - strandat 106.951 kb on - strandat 106.951 kb on - strandat 106.951 kb on - strandat 106.966 kb on - strand, within CSW01_14510at 107.102 kb on + strand, within CSW01_14510at 107.155 kb on + strand, within CSW01_14510at 107.163 kb on - strand, within CSW01_14510at 107.168 kb on + strand, within CSW01_14510at 107.318 kb on + strand, within CSW01_14510at 107.391 kb on - strand, within CSW01_14510at 107.474 kb on + strand, within CSW01_14510at 107.482 kb on - strand, within CSW01_14510at 107.482 kb on - strand, within CSW01_14510at 107.507 kb on - strand, within CSW01_14510at 107.543 kb on + strand, within CSW01_14510at 107.550 kb on + strand, within CSW01_14510at 107.603 kb on + strand, within CSW01_14510at 107.640 kb on + strand, within CSW01_14510at 107.642 kb on + strand, within CSW01_14510at 107.650 kb on - strand, within CSW01_14510at 107.650 kb on - strand, within CSW01_14510at 107.652 kb on + strand, within CSW01_14510at 107.718 kb on + strand, within CSW01_14510at 107.738 kb on - strand, within CSW01_14510at 107.863 kb on + strandat 107.871 kb on - strandat 107.871 kb on - strandat 107.884 kb on + strandat 107.910 kb on + strandat 107.912 kb on - strandat 107.918 kb on - strandat 107.923 kb on - strandat 107.980 kb on + strand, within CSW01_14515at 107.980 kb on + strand, within CSW01_14515at 107.988 kb on - strand, within CSW01_14515at 107.988 kb on - strand, within CSW01_14515at 107.989 kb on - strand, within CSW01_14515at 108.024 kb on + strand, within CSW01_14515at 108.056 kb on - strand, within CSW01_14515at 108.106 kb on + strand, within CSW01_14515at 108.106 kb on + strand, within CSW01_14515at 108.114 kb on - strand, within CSW01_14515at 108.114 kb on - strand, within CSW01_14515at 108.114 kb on - strand, within CSW01_14515at 108.114 kb on - strand, within CSW01_14515at 108.235 kb on - strand, within CSW01_14515at 108.244 kb on + strand, within CSW01_14515at 108.326 kb on - strandat 108.443 kb on + strandat 108.443 kb on + strandat 108.476 kb on - strand, within CSW01_14520at 108.602 kb on - strand, within CSW01_14520at 108.603 kb on + strand, within CSW01_14520at 108.721 kb on - strand, within CSW01_14520at 108.774 kb on + strand, within CSW01_14520at 108.782 kb on - strand, within CSW01_14520at 108.800 kb on + strand, within CSW01_14520at 108.800 kb on + strand, within CSW01_14520at 108.800 kb on + strand, within CSW01_14520at 108.808 kb on - strand, within CSW01_14520at 108.808 kb on - strand, within CSW01_14520at 108.954 kb on + strand, within CSW01_14520at 108.970 kb on - strand, within CSW01_14520at 109.113 kb on + strand, within CSW01_14520at 109.113 kb on + strand, within CSW01_14520at 109.121 kb on - strand, within CSW01_14520at 109.121 kb on - strand, within CSW01_14520at 109.121 kb on - strand, within CSW01_14520at 109.190 kb on + strand, within CSW01_14520at 109.199 kb on - strand, within CSW01_14520

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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106,943 + +1.1
106,943 + +1.5
106,943 + +2.5
106,943 + +1.4
106,943 + -0.4
106,943 + -0.8
106,943 + +0.6
106,943 + +0.1
106,951 - -0.1
106,951 - +1.2
106,951 - -1.0
106,951 - -2.5
106,951 - -3.8
106,966 - CSW01_14510 0.11 +0.0
107,102 + CSW01_14510 0.24 -0.8
107,155 + CSW01_14510 0.29 -2.3
107,163 - CSW01_14510 0.30 -2.3
107,168 + CSW01_14510 0.31 +0.7
107,318 + CSW01_14510 0.45 +1.3
107,391 - CSW01_14510 0.52 +1.1
107,474 + CSW01_14510 0.60 +3.0
107,482 - CSW01_14510 0.61 +0.4
107,482 - CSW01_14510 0.61 +2.0
107,507 - CSW01_14510 0.63 -1.8
107,543 + CSW01_14510 0.67 -1.6
107,550 + CSW01_14510 0.67 +2.6
107,603 + CSW01_14510 0.72 -1.3
107,640 + CSW01_14510 0.76 +1.4
107,642 + CSW01_14510 0.76 -0.6
107,650 - CSW01_14510 0.77 -1.2
107,650 - CSW01_14510 0.77 -2.3
107,652 + CSW01_14510 0.77 -1.7
107,718 + CSW01_14510 0.83 -0.1
107,738 - CSW01_14510 0.85 +0.7
107,863 + -1.2
107,871 - +0.8
107,871 - +2.9
107,884 + +0.0
107,910 + -0.4
107,912 - -4.0
107,918 - -1.0
107,923 - -0.2
107,980 + CSW01_14515 0.15 +0.4
107,980 + CSW01_14515 0.15 -2.0
107,988 - CSW01_14515 0.17 -3.2
107,988 - CSW01_14515 0.17 -1.8
107,989 - CSW01_14515 0.17 -1.9
108,024 + CSW01_14515 0.26 +2.0
108,056 - CSW01_14515 0.35 +1.3
108,106 + CSW01_14515 0.48 +1.5
108,106 + CSW01_14515 0.48 +1.1
108,114 - CSW01_14515 0.51 +1.4
108,114 - CSW01_14515 0.51 -0.4
108,114 - CSW01_14515 0.51 -1.7
108,114 - CSW01_14515 0.51 +2.0
108,235 - CSW01_14515 0.83 -1.0
108,244 + CSW01_14515 0.85 +1.1
108,326 - -1.8
108,443 + -0.3
108,443 + -2.0
108,476 - CSW01_14520 0.11 +0.6
108,602 - CSW01_14520 0.20 -2.5
108,603 + CSW01_14520 0.20 -1.4
108,721 - CSW01_14520 0.27 +1.3
108,774 + CSW01_14520 0.31 -0.4
108,782 - CSW01_14520 0.31 -0.7
108,800 + CSW01_14520 0.32 -1.7
108,800 + CSW01_14520 0.32 +1.1
108,800 + CSW01_14520 0.32 -2.2
108,808 - CSW01_14520 0.33 +1.0
108,808 - CSW01_14520 0.33 +0.5
108,954 + CSW01_14520 0.42 -0.5
108,970 - CSW01_14520 0.43 +2.0
109,113 + CSW01_14520 0.52 -2.0
109,113 + CSW01_14520 0.52 -2.7
109,121 - CSW01_14520 0.53 +0.9
109,121 - CSW01_14520 0.53 +0.1
109,121 - CSW01_14520 0.53 +0.3
109,190 + CSW01_14520 0.57 +0.2
109,199 - CSW01_14520 0.58 -3.5

Or see this region's nucleotide sequence