Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14390 and CSW01_14395 overlap by 4 nucleotides CSW01_14395 and CSW01_14400 overlap by 62 nucleotides CSW01_14400 and CSW01_14405 are separated by 163 nucleotides
CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091
_14390
CSW01_14395: CSW01_14395 - oxidoreductase, at 84,088 to 84,555
_14395
CSW01_14400: CSW01_14400 - hypothetical protein, at 84,494 to 84,682
_14400
CSW01_14405: CSW01_14405 - hypothetical protein, at 84,846 to 86,222
_14405
Position (kb) 84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 83.088 kb on + strand at 83.088 kb on + strand at 83.091 kb on - strand at 83.183 kb on + strand, within CSW01_14390 at 83.205 kb on - strand, within CSW01_14390 at 83.207 kb on + strand, within CSW01_14390 at 83.207 kb on + strand, within CSW01_14390 at 83.215 kb on - strand, within CSW01_14390 at 83.215 kb on - strand, within CSW01_14390 at 83.294 kb on - strand, within CSW01_14390 at 83.422 kb on - strand, within CSW01_14390 at 83.442 kb on + strand, within CSW01_14390 at 83.457 kb on - strand, within CSW01_14390 at 83.459 kb on + strand, within CSW01_14390 at 83.459 kb on + strand, within CSW01_14390 at 83.459 kb on + strand, within CSW01_14390 at 83.459 kb on + strand, within CSW01_14390 at 83.466 kb on + strand, within CSW01_14390 at 83.467 kb on - strand, within CSW01_14390 at 83.467 kb on - strand, within CSW01_14390 at 83.467 kb on - strand, within CSW01_14390 at 83.474 kb on + strand, within CSW01_14390 at 83.502 kb on - strand, within CSW01_14390 at 83.509 kb on + strand, within CSW01_14390 at 83.509 kb on + strand, within CSW01_14390 at 83.517 kb on - strand, within CSW01_14390 at 83.662 kb on + strand, within CSW01_14390 at 83.790 kb on + strand, within CSW01_14390 at 83.827 kb on + strand, within CSW01_14390 at 83.875 kb on + strand, within CSW01_14390 at 83.875 kb on + strand, within CSW01_14390 at 83.883 kb on - strand, within CSW01_14390 at 83.917 kb on + strand, within CSW01_14390 at 83.955 kb on + strand, within CSW01_14390 at 83.955 kb on + strand, within CSW01_14390 at 83.955 kb on + strand, within CSW01_14390 at 83.963 kb on - strand, within CSW01_14390 at 83.963 kb on - strand, within CSW01_14390 at 83.963 kb on - strand, within CSW01_14390 at 83.963 kb on - strand, within CSW01_14390 at 83.963 kb on - strand, within CSW01_14390 at 84.029 kb on + strand at 84.178 kb on + strand, within CSW01_14395 at 84.178 kb on + strand, within CSW01_14395 at 84.178 kb on + strand, within CSW01_14395 at 84.320 kb on + strand, within CSW01_14395 at 84.363 kb on + strand, within CSW01_14395 at 84.363 kb on + strand, within CSW01_14395 at 84.395 kb on + strand, within CSW01_14395 at 84.432 kb on + strand, within CSW01_14395 at 84.440 kb on - strand, within CSW01_14395 at 84.515 kb on + strand at 84.515 kb on + strand at 84.538 kb on - strand at 84.572 kb on - strand, within CSW01_14400 at 84.580 kb on - strand, within CSW01_14400 at 84.580 kb on - strand, within CSW01_14400 at 84.582 kb on - strand, within CSW01_14400 at 84.582 kb on - strand, within CSW01_14400 at 84.844 kb on + strand at 84.852 kb on - strand at 84.951 kb on + strand at 84.956 kb on + strand at 84.956 kb on + strand at 84.956 kb on + strand at 84.991 kb on + strand, within CSW01_14405 at 85.188 kb on + strand, within CSW01_14405 at 85.212 kb on + strand, within CSW01_14405 at 85.216 kb on + strand, within CSW01_14405 at 85.220 kb on - strand, within CSW01_14405 at 85.228 kb on + strand, within CSW01_14405 at 85.254 kb on + strand, within CSW01_14405 at 85.285 kb on + strand, within CSW01_14405 at 85.417 kb on + strand, within CSW01_14405 at 85.454 kb on - strand, within CSW01_14405 at 85.480 kb on + strand, within CSW01_14405 at 85.481 kb on - strand, within CSW01_14405 at 85.517 kb on + strand, within CSW01_14405
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 83,088 + -0.3 83,088 + -0.8 83,091 - +1.5 83,183 + CSW01_14390 0.17 -1.3 83,205 - CSW01_14390 0.19 +1.3 83,207 + CSW01_14390 0.20 -0.1 83,207 + CSW01_14390 0.20 +2.0 83,215 - CSW01_14390 0.20 +0.1 83,215 - CSW01_14390 0.20 +2.3 83,294 - CSW01_14390 0.28 +0.3 83,422 - CSW01_14390 0.39 -0.2 83,442 + CSW01_14390 0.41 -2.1 83,457 - CSW01_14390 0.42 +1.1 83,459 + CSW01_14390 0.43 -1.2 83,459 + CSW01_14390 0.43 -2.9 83,459 + CSW01_14390 0.43 +1.0 83,459 + CSW01_14390 0.43 -4.0 83,466 + CSW01_14390 0.43 +1.7 83,467 - CSW01_14390 0.43 +1.1 83,467 - CSW01_14390 0.43 -2.2 83,467 - CSW01_14390 0.43 -0.4 83,474 + CSW01_14390 0.44 +1.6 83,502 - CSW01_14390 0.46 -1.2 83,509 + CSW01_14390 0.47 -3.0 83,509 + CSW01_14390 0.47 -1.6 83,517 - CSW01_14390 0.48 +1.8 83,662 + CSW01_14390 0.61 +1.0 83,790 + CSW01_14390 0.73 +0.4 83,827 + CSW01_14390 0.76 +0.3 83,875 + CSW01_14390 0.80 +1.2 83,875 + CSW01_14390 0.80 -1.0 83,883 - CSW01_14390 0.81 +1.5 83,917 + CSW01_14390 0.84 +0.5 83,955 + CSW01_14390 0.88 -0.6 83,955 + CSW01_14390 0.88 +1.9 83,955 + CSW01_14390 0.88 +0.5 83,963 - CSW01_14390 0.88 -1.3 83,963 - CSW01_14390 0.88 -1.1 83,963 - CSW01_14390 0.88 -2.6 83,963 - CSW01_14390 0.88 -3.8 83,963 - CSW01_14390 0.88 -1.5 84,029 + +1.6 84,178 + CSW01_14395 0.19 -2.5 84,178 + CSW01_14395 0.19 -1.3 84,178 + CSW01_14395 0.19 +1.0 84,320 + CSW01_14395 0.50 -0.3 84,363 + CSW01_14395 0.59 +0.1 84,363 + CSW01_14395 0.59 +1.0 84,395 + CSW01_14395 0.66 +1.2 84,432 + CSW01_14395 0.74 -0.8 84,440 - CSW01_14395 0.75 -1.2 84,515 + -1.8 84,515 + +1.2 84,538 - -2.0 84,572 - CSW01_14400 0.41 -0.2 84,580 - CSW01_14400 0.46 +0.3 84,580 - CSW01_14400 0.46 +0.8 84,582 - CSW01_14400 0.47 -0.1 84,582 - CSW01_14400 0.47 +0.2 84,844 + +0.7 84,852 - +0.4 84,951 + -1.3 84,956 + -1.2 84,956 + -0.2 84,956 + +0.5 84,991 + CSW01_14405 0.11 +0.1 85,188 + CSW01_14405 0.25 -0.4 85,212 + CSW01_14405 0.27 -0.8 85,216 + CSW01_14405 0.27 -1.4 85,220 - CSW01_14405 0.27 +1.9 85,228 + CSW01_14405 0.28 -1.3 85,254 + CSW01_14405 0.30 +0.9 85,285 + CSW01_14405 0.32 +0.1 85,417 + CSW01_14405 0.41 -1.9 85,454 - CSW01_14405 0.44 -1.3 85,480 + CSW01_14405 0.46 +1.1 85,481 - CSW01_14405 0.46 -1.2 85,517 + CSW01_14405 0.49 +1.0
Or see this region's nucleotide sequence