Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14350

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14345 and CSW01_14350 are separated by 9 nucleotidesCSW01_14350 and CSW01_14355 overlap by 4 nucleotides CSW01_14345: CSW01_14345 - ligand-gated channel, at 70,871 to 73,012 _14345 CSW01_14350: CSW01_14350 - proconvertase P-domain protein, at 73,022 to 75,328 _14350 CSW01_14355: CSW01_14355 - DUF1566 domain-containing protein, at 75,325 to 76,767 _14355 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.197 kb on + strand, within CSW01_14345at 72.275 kb on - strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.672 kb on + strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.680 kb on - strand, within CSW01_14345at 72.683 kb on + strand, within CSW01_14345at 72.683 kb on + strand, within CSW01_14345at 72.690 kb on + strand, within CSW01_14345at 72.745 kb on - strand, within CSW01_14345at 72.745 kb on - strand, within CSW01_14345at 72.750 kb on - strand, within CSW01_14345at 72.788 kb on - strand, within CSW01_14345at 72.793 kb on - strand, within CSW01_14345at 72.793 kb on - strand, within CSW01_14345at 72.874 kb on - strandat 72.879 kb on + strandat 72.998 kb on + strandat 73.002 kb on - strandat 73.064 kb on + strandat 73.072 kb on - strandat 73.095 kb on - strandat 73.112 kb on - strandat 73.163 kb on - strandat 73.199 kb on - strandat 73.201 kb on + strandat 73.201 kb on + strandat 73.303 kb on - strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.330 kb on + strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.338 kb on - strand, within CSW01_14350at 73.375 kb on + strand, within CSW01_14350at 73.383 kb on - strand, within CSW01_14350at 73.471 kb on - strand, within CSW01_14350at 73.500 kb on + strand, within CSW01_14350at 73.521 kb on - strand, within CSW01_14350at 73.526 kb on - strand, within CSW01_14350at 73.647 kb on + strand, within CSW01_14350at 73.720 kb on - strand, within CSW01_14350at 73.774 kb on + strand, within CSW01_14350at 73.777 kb on - strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.806 kb on + strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.814 kb on - strand, within CSW01_14350at 73.855 kb on + strand, within CSW01_14350at 73.904 kb on - strand, within CSW01_14350at 74.000 kb on + strand, within CSW01_14350at 74.000 kb on + strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350at 74.008 kb on - strand, within CSW01_14350at 74.042 kb on + strand, within CSW01_14350at 74.188 kb on + strand, within CSW01_14350at 74.196 kb on - strand, within CSW01_14350at 74.203 kb on + strand, within CSW01_14350at 74.251 kb on - strand, within CSW01_14350at 74.320 kb on + strand, within CSW01_14350at 74.320 kb on + strand, within CSW01_14350at 74.320 kb on + strand, within CSW01_14350at 74.325 kb on + strand, within CSW01_14350at 74.326 kb on - strand, within CSW01_14350at 74.328 kb on - strand, within CSW01_14350at 74.328 kb on - strand, within CSW01_14350at 74.333 kb on + strand, within CSW01_14350at 74.469 kb on - strand, within CSW01_14350at 74.528 kb on + strand, within CSW01_14350at 74.584 kb on + strand, within CSW01_14350at 74.590 kb on - strand, within CSW01_14350at 74.592 kb on - strand, within CSW01_14350at 74.626 kb on + strand, within CSW01_14350at 74.727 kb on - strand, within CSW01_14350at 74.727 kb on - strand, within CSW01_14350at 74.803 kb on - strand, within CSW01_14350at 74.807 kb on + strand, within CSW01_14350at 74.845 kb on + strand, within CSW01_14350at 74.906 kb on + strand, within CSW01_14350at 75.254 kb on - strandat 75.265 kb on - strandat 75.303 kb on + strandat 75.340 kb on + strandat 75.396 kb on + strandat 75.427 kb on + strandat 75.526 kb on - strand, within CSW01_14355at 75.661 kb on + strand, within CSW01_14355at 75.661 kb on + strand, within CSW01_14355at 75.669 kb on - strand, within CSW01_14355at 75.671 kb on - strand, within CSW01_14355at 75.694 kb on + strand, within CSW01_14355at 75.788 kb on - strand, within CSW01_14355at 75.971 kb on + strand, within CSW01_14355at 75.981 kb on + strand, within CSW01_14355at 75.989 kb on - strand, within CSW01_14355at 76.041 kb on + strand, within CSW01_14355at 76.163 kb on - strand, within CSW01_14355at 76.181 kb on - strand, within CSW01_14355at 76.193 kb on + strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.244 kb on - strand, within CSW01_14355at 76.320 kb on + strand, within CSW01_14355

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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72,197 + CSW01_14345 0.62 -3.0
72,275 - CSW01_14345 0.66 +1.2
72,672 + CSW01_14345 0.84 +0.2
72,672 + CSW01_14345 0.84 +0.7
72,672 + CSW01_14345 0.84 -0.8
72,672 + CSW01_14345 0.84 -0.5
72,672 + CSW01_14345 0.84 -0.5
72,672 + CSW01_14345 0.84 -3.4
72,672 + CSW01_14345 0.84 +0.8
72,672 + CSW01_14345 0.84 +0.6
72,672 + CSW01_14345 0.84 +0.4
72,672 + CSW01_14345 0.84 -0.1
72,672 + CSW01_14345 0.84 +2.1
72,680 - CSW01_14345 0.84 +0.0
72,680 - CSW01_14345 0.84 -2.0
72,680 - CSW01_14345 0.84 -1.7
72,680 - CSW01_14345 0.84 +2.0
72,683 + CSW01_14345 0.85 -0.3
72,683 + CSW01_14345 0.85 -0.6
72,690 + CSW01_14345 0.85 +0.6
72,745 - CSW01_14345 0.87 +1.0
72,745 - CSW01_14345 0.87 -0.6
72,750 - CSW01_14345 0.88 -2.8
72,788 - CSW01_14345 0.89 -3.1
72,793 - CSW01_14345 0.90 -1.3
72,793 - CSW01_14345 0.90 +0.2
72,874 - -1.2
72,879 + -0.1
72,998 + +0.1
73,002 - -0.1
73,064 + +0.1
73,072 - +1.0
73,095 - -2.6
73,112 - +0.4
73,163 - -1.8
73,199 - -3.3
73,201 + -0.4
73,201 + -0.4
73,303 - CSW01_14350 0.12 +0.9
73,330 + CSW01_14350 0.13 +1.8
73,330 + CSW01_14350 0.13 +0.8
73,330 + CSW01_14350 0.13 +0.8
73,330 + CSW01_14350 0.13 -1.3
73,330 + CSW01_14350 0.13 -3.1
73,330 + CSW01_14350 0.13 +0.4
73,338 - CSW01_14350 0.14 -1.3
73,338 - CSW01_14350 0.14 -0.5
73,338 - CSW01_14350 0.14 +0.4
73,338 - CSW01_14350 0.14 -0.6
73,338 - CSW01_14350 0.14 +0.4
73,375 + CSW01_14350 0.15 +0.5
73,383 - CSW01_14350 0.16 +2.3
73,471 - CSW01_14350 0.19 -0.8
73,500 + CSW01_14350 0.21 -3.3
73,521 - CSW01_14350 0.22 +2.3
73,526 - CSW01_14350 0.22 -2.9
73,647 + CSW01_14350 0.27 +0.5
73,720 - CSW01_14350 0.30 -0.9
73,774 + CSW01_14350 0.33 +2.0
73,777 - CSW01_14350 0.33 +2.2
73,806 + CSW01_14350 0.34 +1.2
73,806 + CSW01_14350 0.34 +0.3
73,806 + CSW01_14350 0.34 -0.0
73,806 + CSW01_14350 0.34 +1.1
73,806 + CSW01_14350 0.34 -0.6
73,806 + CSW01_14350 0.34 +0.1
73,806 + CSW01_14350 0.34 +0.2
73,806 + CSW01_14350 0.34 +0.1
73,806 + CSW01_14350 0.34 -2.3
73,806 + CSW01_14350 0.34 -2.6
73,806 + CSW01_14350 0.34 +1.3
73,814 - CSW01_14350 0.34 -2.0
73,814 - CSW01_14350 0.34 -2.4
73,814 - CSW01_14350 0.34 -2.1
73,814 - CSW01_14350 0.34 +0.0
73,814 - CSW01_14350 0.34 +1.9
73,814 - CSW01_14350 0.34 +0.3
73,814 - CSW01_14350 0.34 -0.6
73,855 + CSW01_14350 0.36 +0.6
73,904 - CSW01_14350 0.38 +1.3
74,000 + CSW01_14350 0.42 -3.3
74,000 + CSW01_14350 0.42 +0.9
74,008 - CSW01_14350 0.43 +0.5
74,008 - CSW01_14350 0.43 +0.1
74,008 - CSW01_14350 0.43 +1.6
74,042 + CSW01_14350 0.44 +1.9
74,188 + CSW01_14350 0.51 -2.5
74,196 - CSW01_14350 0.51 +0.4
74,203 + CSW01_14350 0.51 -1.5
74,251 - CSW01_14350 0.53 -0.3
74,320 + CSW01_14350 0.56 +1.0
74,320 + CSW01_14350 0.56 -2.0
74,320 + CSW01_14350 0.56 -1.5
74,325 + CSW01_14350 0.56 +1.1
74,326 - CSW01_14350 0.57 -1.7
74,328 - CSW01_14350 0.57 +1.2
74,328 - CSW01_14350 0.57 +0.9
74,333 + CSW01_14350 0.57 +0.3
74,469 - CSW01_14350 0.63 +1.1
74,528 + CSW01_14350 0.65 +1.7
74,584 + CSW01_14350 0.68 -2.3
74,590 - CSW01_14350 0.68 +0.6
74,592 - CSW01_14350 0.68 +0.5
74,626 + CSW01_14350 0.70 -1.9
74,727 - CSW01_14350 0.74 -0.3
74,727 - CSW01_14350 0.74 -1.0
74,803 - CSW01_14350 0.77 +0.1
74,807 + CSW01_14350 0.77 -0.6
74,845 + CSW01_14350 0.79 +0.9
74,906 + CSW01_14350 0.82 +0.5
75,254 - +0.4
75,265 - +1.5
75,303 + -1.8
75,340 + +0.8
75,396 + -0.6
75,427 + +0.0
75,526 - CSW01_14355 0.14 -2.1
75,661 + CSW01_14355 0.23 +0.8
75,661 + CSW01_14355 0.23 -0.2
75,669 - CSW01_14355 0.24 +0.8
75,671 - CSW01_14355 0.24 -0.6
75,694 + CSW01_14355 0.26 +1.5
75,788 - CSW01_14355 0.32 +1.0
75,971 + CSW01_14355 0.45 +1.3
75,981 + CSW01_14355 0.45 -1.0
75,989 - CSW01_14355 0.46 +1.4
76,041 + CSW01_14355 0.50 +2.5
76,163 - CSW01_14355 0.58 +0.7
76,181 - CSW01_14355 0.59 -2.1
76,193 + CSW01_14355 0.60 -0.6
76,206 - CSW01_14355 0.61 +2.0
76,206 - CSW01_14355 0.61 +0.0
76,244 - CSW01_14355 0.64 +0.4
76,320 + CSW01_14355 0.69 -1.3

Or see this region's nucleotide sequence