Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13700

Experiment: ICP1_phage_0.23_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep2
2,919,745	+				+1.4
2,919,745	+				-1.8
2,919,854	-				+0.4
2,919,924	-				+1.1
2,919,924	-				+0.5
2,919,942	+				-0.1
2,919,949	+		CSW01_13695	0.11	+1.3
2,919,949	+		CSW01_13695	0.11	+1.2
2,919,995	-		CSW01_13695	0.17	+0.2
2,920,034	+		CSW01_13695	0.22	+1.5
2,920,083	+		CSW01_13695	0.29	+3.1
2,920,086	-		CSW01_13695	0.30	+0.7
2,920,091	-		CSW01_13695	0.30	+0.8
2,920,091	-		CSW01_13695	0.30	+0.9
2,920,115	-		CSW01_13695	0.34	+0.5
2,920,190	+		CSW01_13695	0.44	+1.0
2,920,192	+		CSW01_13695	0.44	+2.0
2,920,192	+		CSW01_13695	0.44	+0.4
2,920,192	+		CSW01_13695	0.44	+1.4
2,920,192	+		CSW01_13695	0.44	-0.7
2,920,197	+		CSW01_13695	0.45	+0.2
2,920,200	-		CSW01_13695	0.45	+0.9
2,920,200	-		CSW01_13695	0.45	+1.1
2,920,200	-		CSW01_13695	0.45	-1.1
2,920,200	-		CSW01_13695	0.45	-3.7
2,920,200	-		CSW01_13695	0.45	+0.1
2,920,200	-		CSW01_13695	0.45	+1.9
2,920,200	-		CSW01_13695	0.45	+1.1
2,920,259	-		CSW01_13695	0.54	-3.2
2,920,272	-		CSW01_13695	0.55	+0.5
2,920,306	+		CSW01_13695	0.60	+0.8
2,920,337	+		CSW01_13695	0.64	-3.3
2,920,345	-		CSW01_13695	0.65	-0.5
2,920,345	-		CSW01_13695	0.65	-2.0
2,920,377	+		CSW01_13695	0.70	-1.4
2,920,380	-		CSW01_13695	0.70	+0.7
2,920,387	+		CSW01_13695	0.71	-2.5
2,920,395	-		CSW01_13695	0.72	-2.5
2,920,395	-		CSW01_13695	0.72	+0.6
2,920,432	-		CSW01_13695	0.77	+0.2
2,920,447	-		CSW01_13695	0.80	-0.0
2,920,458	+		CSW01_13695	0.81	+1.4
2,920,493	-		CSW01_13695	0.86	-1.8
2,920,504	+		CSW01_13695	0.87	+1.3
2,920,516	+		CSW01_13695	0.89	+0.6
2,920,524	+				-2.0
2,920,530	+				-0.1
2,920,530	+				-2.8
2,920,530	+				+2.0
2,920,530	+				+1.4
2,920,617	+				-0.1
2,920,625	+				+0.5
2,920,627	-				-2.8
2,920,627	-				-0.4
2,920,784	-		CSW01_13700	0.11	+0.2
2,920,793	-		CSW01_13700	0.13	-2.1
2,920,793	-		CSW01_13700	0.13	-3.9
2,920,809	+		CSW01_13700	0.16	-0.5
2,920,888	+		CSW01_13700	0.32	-0.9
2,920,888	-		CSW01_13700	0.32	-2.4
2,920,898	-		CSW01_13700	0.34	-0.1
2,921,037	-		CSW01_13700	0.63	-3.9
2,921,061	-		CSW01_13700	0.68	+1.0
2,921,071	+		CSW01_13700	0.70	+0.5
2,921,071	+		CSW01_13700	0.70	+1.3
2,921,079	-		CSW01_13700	0.71	-0.7
2,921,079	-		CSW01_13700	0.71	+1.0
2,921,079	-		CSW01_13700	0.71	+0.4
2,921,117	-		CSW01_13700	0.79	-3.1
2,921,171	+				+1.1
2,921,190	-				-4.4
2,921,190	-				-1.6
2,921,213	-				-0.1
2,921,233	+				+0.7
2,921,268	+				+1.4
2,921,268	+				+0.1
2,921,290	-				+1.2
2,921,290	-				-2.9
2,921,365	+				-0.8
2,921,366	-				+0.1
2,921,366	-				+1.2
2,921,366	-				+0.4
2,921,370	+				-0.5
2,921,378	+				-0.4
2,921,378	+				+1.0
2,921,378	-				-2.7
2,921,386	-				+0.2
2,921,386	-				+0.5
2,921,410	+				+2.1
2,921,490	+				+0.2
2,921,518	+				-0.5
2,921,521	-				+0.9
2,921,602	+				+1.4
2,921,606	-				-1.9
2,921,607	+				+0.6
2,921,607	+				+0.3
2,921,607	+				+0.8
2,921,615	-				-1.8
2,921,615	-				+0.1
2,921,660	-				-0.7
2,921,674	-				-3.2
2,921,709	+		CSW01_13705	0.11	-2.8
2,921,832	-		CSW01_13705	0.16	+0.8
2,921,857	+		CSW01_13705	0.17	-5.1
2,921,857	+		CSW01_13705	0.17	-2.7
2,921,857	+		CSW01_13705	0.17	+1.8
2,921,857	+		CSW01_13705	0.17	-1.0
2,921,857	+		CSW01_13705	0.17	-3.5
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	-0.8
2,921,857	+		CSW01_13705	0.17	-3.1
2,921,857	+		CSW01_13705	0.17	-2.5
2,921,857	+		CSW01_13705	0.17	+1.8
2,921,857	+		CSW01_13705	0.17	+2.5
2,921,857	+		CSW01_13705	0.17	-0.8
2,921,857	+		CSW01_13705	0.17	+0.2
2,921,857	+		CSW01_13705	0.17	-1.2
2,921,857	+		CSW01_13705	0.17	-0.1
2,921,857	+		CSW01_13705	0.17	-4.7
2,921,857	+		CSW01_13705	0.17	-1.5
2,921,857	+		CSW01_13705	0.17	+0.3
2,921,857	+		CSW01_13705	0.17	-1.1
2,921,857	+		CSW01_13705	0.17	-2.6
2,921,857	+		CSW01_13705	0.17	+0.5
2,921,857	+		CSW01_13705	0.17	-0.3
2,921,857	+		CSW01_13705	0.17	+1.2
2,921,857	+		CSW01_13705	0.17	-1.7
2,921,857	+		CSW01_13705	0.17	+0.4
2,921,857	+		CSW01_13705	0.17	-1.1
2,921,857	+		CSW01_13705	0.17	-0.4
2,921,857	+		CSW01_13705	0.17	-0.9
2,921,857	+		CSW01_13705	0.17	+1.5
2,921,857	+		CSW01_13705	0.17	-2.6
2,921,857	+		CSW01_13705	0.17	+1.1
2,921,857	+		CSW01_13705	0.17	+0.6
2,921,857	+		CSW01_13705	0.17	-2.0
2,921,857	+		CSW01_13705	0.17	+2.6
2,921,857	+		CSW01_13705	0.17	+0.9
2,921,857	+		CSW01_13705	0.17	-1.1
2,921,857	+		CSW01_13705	0.17	+0.2
2,921,857	+		CSW01_13705	0.17	-2.6
2,921,857	+		CSW01_13705	0.17	-2.5
2,921,857	+		CSW01_13705	0.17	-0.5
2,921,865	-		CSW01_13705	0.17	+0.4
2,921,865	-		CSW01_13705	0.17	-0.3
2,921,865	-		CSW01_13705	0.17	+0.7
2,921,865	-		CSW01_13705	0.17	+1.1
2,921,865	-		CSW01_13705	0.17	-2.9
2,921,865	-		CSW01_13705	0.17	+1.4
2,921,865	-		CSW01_13705	0.17	+0.7
2,921,865	-		CSW01_13705	0.17	-2.0
2,921,865	-		CSW01_13705	0.17	-1.0
2,921,865	-		CSW01_13705	0.17	-2.3
2,921,865	-		CSW01_13705	0.17	-1.7
2,921,865	-		CSW01_13705	0.17	-0.8
2,921,865	-		CSW01_13705	0.17	+1.0
2,921,865	-		CSW01_13705	0.17	+0.9
2,921,865	-		CSW01_13705	0.17	-2.5
2,921,865	-		CSW01_13705	0.17	-3.0
2,921,865	-		CSW01_13705	0.17	-0.4
2,921,865	-		CSW01_13705	0.17	+1.3
2,921,865	-		CSW01_13705	0.17	-4.1
2,921,865	-		CSW01_13705	0.17	-1.2
2,921,865	-		CSW01_13705	0.17	+1.3
2,921,865	-		CSW01_13705	0.17	-1.0
2,921,865	-		CSW01_13705	0.17	+1.0
2,921,865	-		CSW01_13705	0.17	-0.2
2,921,865	-		CSW01_13705	0.17	+0.8
2,921,865	-		CSW01_13705	0.17	+0.6
2,921,865	-		CSW01_13705	0.17	-4.0
2,921,865	-		CSW01_13705	0.17	-0.6
2,921,865	-		CSW01_13705	0.17	-3.5
2,921,865	-		CSW01_13705	0.17	-0.4
2,921,865	-		CSW01_13705	0.17	+0.1
2,921,865	-		CSW01_13705	0.17	-3.7
2,921,865	-		CSW01_13705	0.17	-1.2
2,921,865	-		CSW01_13705	0.17	+0.2
2,921,865	-		CSW01_13705	0.17	+0.3
2,921,893	+		CSW01_13705	0.19	+0.8
2,921,920	+		CSW01_13705	0.20	-1.7
2,921,948	-		CSW01_13705	0.21	-2.6
2,921,975	+		CSW01_13705	0.22	-1.2
2,922,047	+		CSW01_13705	0.25	+0.1
2,922,053	+		CSW01_13705	0.25	-0.7
2,922,081	+		CSW01_13705	0.27	+0.7
2,922,081	+		CSW01_13705	0.27	-2.7
2,922,159	+		CSW01_13705	0.30	-3.5
2,922,165	+		CSW01_13705	0.30	+0.1
2,922,167	-		CSW01_13705	0.30	-2.8
2,922,214	-		CSW01_13705	0.32	-2.4