Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13310

Experiment: ICP1_phage_0.23_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep2
2,831,605	-		CSW01_13300	0.76	-1.4
2,831,615	-		CSW01_13300	0.77	-3.4
2,831,633	-		CSW01_13300	0.79	+1.0
2,831,643	-		CSW01_13300	0.80	+0.2
2,831,752	+		CSW01_13300	0.90	+0.3
2,831,752	+		CSW01_13300	0.90	-2.7
2,831,755	-		CSW01_13300	0.90	+0.6
2,831,760	-				+0.5
2,831,764	+				+1.2
2,831,791	+				-1.0
2,831,824	+				+2.4
2,831,832	-				-1.1
2,831,946	+		CSW01_13305	0.13	-2.0
2,831,958	-		CSW01_13305	0.15	+0.4
2,831,982	+		CSW01_13305	0.20	-2.5
2,832,231	-		CSW01_13305	0.67	-0.7
2,832,241	-		CSW01_13305	0.69	-1.2
2,832,331	-		CSW01_13305	0.86	-3.0
2,832,384	+				-3.0
2,832,404	+				-1.2
2,832,581	+				+0.2
2,832,597	-				+0.4
2,832,679	-				-2.5
2,832,681	+				+0.9
2,832,748	+				+0.0
2,832,820	-		CSW01_13310	0.13	+1.1
2,832,820	-		CSW01_13310	0.13	-2.2
2,832,851	+		CSW01_13310	0.15	-0.3
2,832,870	-		CSW01_13310	0.16	-2.4
2,832,870	-		CSW01_13310	0.16	-0.3
2,832,872	-		CSW01_13310	0.16	-2.7
2,832,904	-		CSW01_13310	0.18	-1.5
2,832,918	-		CSW01_13310	0.19	-3.1
2,832,918	-		CSW01_13310	0.19	-2.4
2,832,925	-		CSW01_13310	0.19	-2.5
2,832,993	-		CSW01_13310	0.23	+1.0
2,832,994	+		CSW01_13310	0.23	+0.5
2,833,012	+		CSW01_13310	0.24	-0.5
2,833,033	-		CSW01_13310	0.26	-0.2
2,833,094	+		CSW01_13310	0.29	-1.4
2,833,096	+		CSW01_13310	0.29	+0.8
2,833,149	-		CSW01_13310	0.32	+0.6
2,833,185	+		CSW01_13310	0.34	-2.2
2,833,288	+		CSW01_13310	0.40	-2.0
2,833,296	-		CSW01_13310	0.41	+0.6
2,833,398	-		CSW01_13310	0.47	-1.2
2,833,408	+		CSW01_13310	0.47	-0.2
2,833,408	+		CSW01_13310	0.47	-0.2
2,833,501	-		CSW01_13310	0.52	-0.7
2,833,508	+		CSW01_13310	0.53	-4.3
2,833,516	-		CSW01_13310	0.53	-3.5
2,833,556	+		CSW01_13310	0.56	-2.7
2,833,570	-		CSW01_13310	0.56	+1.6
2,833,685	+		CSW01_13310	0.63	-2.7
2,833,685	+		CSW01_13310	0.63	+0.0
2,833,685	+		CSW01_13310	0.63	+0.2
2,833,693	-		CSW01_13310	0.64	-2.8
2,833,693	-		CSW01_13310	0.64	+0.4
2,833,761	-		CSW01_13310	0.67	+1.4
2,833,786	+		CSW01_13310	0.69	+0.4
2,833,857	+		CSW01_13310	0.73	+0.4
2,833,857	+		CSW01_13310	0.73	+0.2
2,833,857	+		CSW01_13310	0.73	-0.8
2,833,857	+		CSW01_13310	0.73	+3.0
2,833,857	+		CSW01_13310	0.73	+0.1
2,833,863	+		CSW01_13310	0.73	+0.2
2,833,863	+		CSW01_13310	0.73	+0.8
2,833,865	-		CSW01_13310	0.73	-0.8
2,833,865	-		CSW01_13310	0.73	-2.6
2,833,865	-		CSW01_13310	0.73	-1.8
2,833,865	-		CSW01_13310	0.73	-1.4
2,833,865	-		CSW01_13310	0.73	+1.3
2,833,871	-		CSW01_13310	0.74	+1.5
2,833,881	+		CSW01_13310	0.74	+0.4
2,833,881	+		CSW01_13310	0.74	+0.4
2,833,881	+		CSW01_13310	0.74	-0.7
2,833,881	+		CSW01_13310	0.74	+1.0
2,833,889	-		CSW01_13310	0.75	+1.4
2,833,903	+		CSW01_13310	0.76	+1.7
2,833,910	-		CSW01_13310	0.76	-0.1
2,833,911	-		CSW01_13310	0.76	-0.4
2,833,964	-		CSW01_13310	0.79	-1.4
2,833,971	+		CSW01_13310	0.80	+0.3
2,833,971	+		CSW01_13310	0.80	-0.1
2,833,974	-		CSW01_13310	0.80	+0.2
2,833,979	-		CSW01_13310	0.80	-3.1
2,834,000	-		CSW01_13310	0.81	-0.2
2,834,046	-		CSW01_13310	0.84	-1.8
2,834,064	+		CSW01_13310	0.85	-1.5
2,834,074	+		CSW01_13310	0.85	-1.2
2,834,074	+		CSW01_13310	0.85	+2.1
2,834,081	+		CSW01_13310	0.86	+0.5
2,834,081	+		CSW01_13310	0.86	-0.1
2,834,081	+		CSW01_13310	0.86	-3.8
2,834,081	+		CSW01_13310	0.86	+1.5
2,834,082	-		CSW01_13310	0.86	+0.9
2,834,082	-		CSW01_13310	0.86	-0.8
2,834,087	-		CSW01_13310	0.86	+0.3
2,834,089	-		CSW01_13310	0.86	-1.0
2,834,090	+		CSW01_13310	0.86	-1.8
2,834,124	+		CSW01_13310	0.88	+1.9
2,834,214	+				-0.1
2,834,242	+				-3.1
2,834,250	-				-1.1
2,834,265	+				+1.0
2,834,350	+				+1.3
2,834,360	+				+0.3
2,834,459	-		CSW01_13315	0.25	+1.4
2,834,461	+		CSW01_13315	0.25	+0.7
2,834,461	+		CSW01_13315	0.25	-1.1
2,834,462	+		CSW01_13315	0.25	+0.4
2,834,462	+		CSW01_13315	0.25	-3.7
2,834,469	-		CSW01_13315	0.27	+0.3
2,834,470	-		CSW01_13315	0.27	-0.4
2,834,531	-		CSW01_13315	0.39	+0.3
2,834,550	+		CSW01_13315	0.42	-0.4
2,834,558	-		CSW01_13315	0.44	-2.6
2,834,565	-		CSW01_13315	0.45	+0.6
2,834,589	+		CSW01_13315	0.50	+1.2
2,834,597	+		CSW01_13315	0.51	-0.5
2,834,597	-		CSW01_13315	0.51	+0.6
2,834,597	-		CSW01_13315	0.51	+0.4
2,834,611	+		CSW01_13315	0.54	+0.7
2,834,611	+		CSW01_13315	0.54	-2.9
2,834,611	+		CSW01_13315	0.54	+1.2
2,834,611	+		CSW01_13315	0.54	+1.3
2,834,611	+		CSW01_13315	0.54	-1.3
2,834,619	-		CSW01_13315	0.55	-2.2
2,834,619	-		CSW01_13315	0.55	+0.4
2,834,619	-		CSW01_13315	0.55	+0.2
2,834,619	-		CSW01_13315	0.55	-0.9
2,834,628	+		CSW01_13315	0.57	-1.5
2,834,655	+		CSW01_13315	0.62	+0.6
2,834,679	-		CSW01_13315	0.67	-3.9
2,834,681	+		CSW01_13315	0.67	-1.3
2,834,713	+		CSW01_13315	0.74	+0.7
2,834,713	+		CSW01_13315	0.74	+0.1
2,834,777	+		CSW01_13315	0.86	+1.4
2,834,777	-		CSW01_13315	0.86	-2.0
2,834,789	+		CSW01_13315	0.88	+1.1
2,834,789	+		CSW01_13315	0.88	-0.2
2,834,797	-		CSW01_13315	0.90	+1.8
2,834,797	-		CSW01_13315	0.90	-1.0
2,834,860	-				-3.1
2,834,875	+				-4.7
2,834,876	+				+0.8
2,834,882	+				-1.4
2,834,883	-				-2.6
2,834,903	+		CSW01_13320	0.11	-2.8
2,834,903	+		CSW01_13320	0.11	-0.0
2,834,917	+		CSW01_13320	0.13	+1.0
2,834,930	-		CSW01_13320	0.15	-3.8
2,834,932	+		CSW01_13320	0.15	-4.0
2,834,932	+		CSW01_13320	0.15	-1.7
2,834,940	-		CSW01_13320	0.17	-0.0
2,835,023	-		CSW01_13320	0.31	+1.2
2,835,063	+		CSW01_13320	0.37	+1.0
2,835,078	+		CSW01_13320	0.40	-0.4
2,835,078	+		CSW01_13320	0.40	+1.5
2,835,078	+		CSW01_13320	0.40	-0.1
2,835,078	+		CSW01_13320	0.40	-0.4
2,835,101	+		CSW01_13320	0.44	+2.8
2,835,109	-		CSW01_13320	0.45	-0.9
2,835,191	-		CSW01_13320	0.59	+0.0
2,835,191	-		CSW01_13320	0.59	-1.2
2,835,201	+		CSW01_13320	0.60	+0.3
2,835,203	+		CSW01_13320	0.61	+0.6
2,835,209	-		CSW01_13320	0.62	+1.7
2,835,211	-		CSW01_13320	0.62	+0.9
2,835,211	-		CSW01_13320	0.62	+0.4
2,835,211	-		CSW01_13320	0.62	+0.2
2,835,211	-		CSW01_13320	0.62	-2.1
2,835,257	-		CSW01_13320	0.70	+0.0
2,835,267	+		CSW01_13320	0.71	+0.4
2,835,283	-		CSW01_13320	0.74	-0.6
2,835,312	+		CSW01_13320	0.79	-3.1
2,835,319	-		CSW01_13320	0.80	-3.3
2,835,319	-		CSW01_13320	0.80	+0.8