Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07465

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07455 and CSW01_07460 are separated by 82 nucleotidesCSW01_07460 and CSW01_07465 are separated by 166 nucleotidesCSW01_07465 and CSW01_07470 are separated by 5 nucleotides CSW01_07455: CSW01_07455 - beta-hydroxydecanoyl-ACP dehydratase, at 1,587,177 to 1,587,695 _07455 CSW01_07460: CSW01_07460 - ribosome modulation factor, at 1,587,778 to 1,587,951 _07460 CSW01_07465: CSW01_07465 - DUF3466 domain-containing protein, at 1,588,118 to 1,589,812 _07465 CSW01_07470: CSW01_07470 - ABC transporter ATP-binding protein, at 1,589,818 to 1,591,737 _07470 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -1 0 1at 1587.832 kb on + strand, within CSW01_07460at 1590.240 kb on - strand, within CSW01_07470at 1590.272 kb on - strand, within CSW01_07470at 1590.426 kb on - strand, within CSW01_07470at 1590.595 kb on - strand, within CSW01_07470

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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1,587,832 + CSW01_07460 0.31 +0.6
1,590,240 - CSW01_07470 0.22 -0.3
1,590,272 - CSW01_07470 0.24 -0.4
1,590,426 - CSW01_07470 0.32 -0.8
1,590,595 - CSW01_07470 0.40 +0.8

Or see this region's nucleotide sequence