Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07250

Experiment: ICP1_phage_0.23_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep2
1,541,013	-		CSW01_07245	0.47	+0.6
1,541,039	-		CSW01_07245	0.49	-2.4
1,541,109	+		CSW01_07245	0.53	+1.1
1,541,109	+		CSW01_07245	0.53	-1.2
1,541,109	+		CSW01_07245	0.53	+0.3
1,541,109	+		CSW01_07245	0.53	+0.4
1,541,109	+		CSW01_07245	0.53	-0.4
1,541,109	+		CSW01_07245	0.53	-1.9
1,541,109	+		CSW01_07245	0.53	+0.9
1,541,109	+		CSW01_07245	0.53	-1.0
1,541,109	+		CSW01_07245	0.53	-1.5
1,541,109	+		CSW01_07245	0.53	+2.5
1,541,109	+		CSW01_07245	0.53	-1.7
1,541,109	+		CSW01_07245	0.53	+0.0
1,541,109	+		CSW01_07245	0.53	-0.3
1,541,109	+		CSW01_07245	0.53	-2.4
1,541,109	+		CSW01_07245	0.53	+1.7
1,541,117	-		CSW01_07245	0.53	+1.6
1,541,117	-		CSW01_07245	0.53	-1.0
1,541,117	-		CSW01_07245	0.53	-1.1
1,541,117	-		CSW01_07245	0.53	-1.5
1,541,117	-		CSW01_07245	0.53	+1.0
1,541,117	-		CSW01_07245	0.53	+0.2
1,541,117	-		CSW01_07245	0.53	-0.3
1,541,117	-		CSW01_07245	0.53	-0.0
1,541,117	-		CSW01_07245	0.53	-1.5
1,541,117	-		CSW01_07245	0.53	-0.5
1,541,152	+		CSW01_07245	0.55	-1.7
1,541,153	+		CSW01_07245	0.55	-0.3
1,541,160	+		CSW01_07245	0.56	-2.1
1,541,173	-		CSW01_07245	0.56	+0.3
1,541,180	+		CSW01_07245	0.57	-0.8
1,541,180	+		CSW01_07245	0.57	+1.1
1,541,180	+		CSW01_07245	0.57	-0.3
1,541,188	-		CSW01_07245	0.57	-0.1
1,541,188	-		CSW01_07245	0.57	+0.3
1,541,188	-		CSW01_07245	0.57	+0.6
1,541,251	+		CSW01_07245	0.61	+0.8
1,541,251	+		CSW01_07245	0.61	+1.0
1,541,251	+		CSW01_07245	0.61	-0.1
1,541,251	+		CSW01_07245	0.61	+0.0
1,541,251	+		CSW01_07245	0.61	+0.3
1,541,251	+		CSW01_07245	0.61	-0.2
1,541,253	-		CSW01_07245	0.61	+1.7
1,541,257	+		CSW01_07245	0.61	-0.4
1,541,259	-		CSW01_07245	0.61	-3.1
1,541,259	-		CSW01_07245	0.61	+1.3
1,541,259	-		CSW01_07245	0.61	-0.2
1,541,259	-		CSW01_07245	0.61	+0.6
1,541,259	-		CSW01_07245	0.61	-2.5
1,541,259	-		CSW01_07245	0.61	-1.0
1,541,259	-		CSW01_07245	0.61	-0.0
1,541,259	-		CSW01_07245	0.61	-0.4
1,541,259	-		CSW01_07245	0.61	-0.9
1,541,259	-		CSW01_07245	0.61	-3.2
1,541,342	+		CSW01_07245	0.66	+0.5
1,541,389	+		CSW01_07245	0.69	-1.4
1,541,389	+		CSW01_07245	0.69	-2.2
1,541,389	+		CSW01_07245	0.69	-0.6
1,541,389	+		CSW01_07245	0.69	-2.6
1,541,389	+		CSW01_07245	0.69	+0.3
1,541,389	+		CSW01_07245	0.69	-1.3
1,541,389	+		CSW01_07245	0.69	-0.3
1,541,389	+		CSW01_07245	0.69	+0.6
1,541,389	+		CSW01_07245	0.69	-1.1
1,541,389	+		CSW01_07245	0.69	-0.2
1,541,389	+		CSW01_07245	0.69	-1.0
1,541,389	+		CSW01_07245	0.69	+1.1
1,541,389	+		CSW01_07245	0.69	-2.8
1,541,389	+		CSW01_07245	0.69	+0.9
1,541,389	+		CSW01_07245	0.69	+1.0
1,541,389	+		CSW01_07245	0.69	-0.8
1,541,389	+		CSW01_07245	0.69	+0.8
1,541,389	+		CSW01_07245	0.69	-0.6
1,541,389	+		CSW01_07245	0.69	-2.4
1,541,389	+		CSW01_07245	0.69	-0.3
1,541,389	+		CSW01_07245	0.69	-0.5
1,541,389	+		CSW01_07245	0.69	-0.1
1,541,389	+		CSW01_07245	0.69	-2.5
1,541,389	+		CSW01_07245	0.69	-1.3
1,541,389	+		CSW01_07245	0.69	-1.6
1,541,389	+		CSW01_07245	0.69	-2.4
1,541,389	+		CSW01_07245	0.69	-2.3
1,541,389	+		CSW01_07245	0.69	+1.2
1,541,389	+		CSW01_07245	0.69	+0.8
1,541,389	+		CSW01_07245	0.69	+1.1
1,541,389	+		CSW01_07245	0.69	-0.7
1,541,389	+		CSW01_07245	0.69	-0.6
1,541,390	+		CSW01_07245	0.69	-2.2
1,541,397	-		CSW01_07245	0.69	-1.4
1,541,397	-		CSW01_07245	0.69	-0.8
1,541,397	-		CSW01_07245	0.69	+1.7
1,541,397	-		CSW01_07245	0.69	-0.2
1,541,397	-		CSW01_07245	0.69	+1.2
1,541,397	-		CSW01_07245	0.69	-2.5
1,541,397	-		CSW01_07245	0.69	+0.3
1,541,397	-		CSW01_07245	0.69	-0.5
1,541,397	-		CSW01_07245	0.69	-2.0
1,541,397	-		CSW01_07245	0.69	-1.7
1,541,397	-		CSW01_07245	0.69	-1.1
1,541,397	-		CSW01_07245	0.69	-1.2
1,541,397	-		CSW01_07245	0.69	+0.2
1,541,397	-		CSW01_07245	0.69	-2.9
1,541,397	-		CSW01_07245	0.69	+0.5
1,541,397	-		CSW01_07245	0.69	+1.1
1,541,397	-		CSW01_07245	0.69	+1.3
1,541,397	-		CSW01_07245	0.69	-0.9
1,541,397	-		CSW01_07245	0.69	-0.2
1,541,397	-		CSW01_07245	0.69	-0.6
1,541,397	-		CSW01_07245	0.69	-0.7
1,541,397	-		CSW01_07245	0.69	-2.4
1,541,397	-		CSW01_07245	0.69	-0.0
1,541,397	-		CSW01_07245	0.69	-1.2
1,541,397	-		CSW01_07245	0.69	-2.7
1,541,397	-		CSW01_07245	0.69	-2.4
1,541,397	-		CSW01_07245	0.69	-1.8
1,541,397	-		CSW01_07245	0.69	+0.7
1,541,397	-		CSW01_07245	0.69	+0.1
1,541,397	-		CSW01_07245	0.69	-0.5
1,541,397	-		CSW01_07245	0.69	-0.0
1,541,446	+		CSW01_07245	0.72	-0.1
1,541,457	+		CSW01_07245	0.73	-2.2
1,541,537	-		CSW01_07245	0.78	-0.0
1,541,605	-		CSW01_07245	0.82	+1.1
1,541,749	-		CSW01_07245	0.90	-0.6
1,541,809	-				-0.2
1,541,834	+				+1.6
1,541,834	+				+0.3
1,541,842	-				+2.5
1,541,842	-				+0.3
1,541,935	+				+0.2
1,541,945	+				-1.2
1,541,945	+				+0.6
1,541,953	-				+1.0
1,541,953	-				-3.6
1,541,953	-				-0.8
1,541,953	-				-0.8
1,542,010	-				-2.2
1,542,110	+				-2.4
1,542,118	-				-1.0
1,542,128	+				+0.1
1,542,130	+				-0.6
1,542,196	+				-1.6
1,542,244	-		CSW01_07250	0.12	+0.1
1,542,281	-		CSW01_07250	0.14	-0.3
1,542,318	+		CSW01_07250	0.15	-2.7
1,542,318	+		CSW01_07250	0.15	+0.8
1,542,318	+		CSW01_07250	0.15	-2.7
1,542,424	-		CSW01_07250	0.20	+0.0
1,542,454	+		CSW01_07250	0.22	+0.1
1,542,470	-		CSW01_07250	0.22	-3.8
1,542,588	-		CSW01_07250	0.28	+0.7
1,542,635	-		CSW01_07250	0.30	+0.3
1,542,738	-		CSW01_07250	0.35	-1.1
1,542,744	-		CSW01_07250	0.35	-0.4
1,542,768	+		CSW01_07250	0.36	+1.1
1,542,782	-		CSW01_07250	0.37	+1.9
1,542,841	+		CSW01_07250	0.40	-2.4
1,542,842	+		CSW01_07250	0.40	-0.4
1,542,902	+		CSW01_07250	0.42	-0.9
1,542,902	+		CSW01_07250	0.42	-0.3
1,542,921	+		CSW01_07250	0.43	+1.3
1,542,978	-		CSW01_07250	0.46	-0.5
1,543,023	-		CSW01_07250	0.48	+0.7
1,543,026	+		CSW01_07250	0.48	+1.3
1,543,026	+		CSW01_07250	0.48	-0.9
1,543,055	-		CSW01_07250	0.49	+0.0
1,543,062	+		CSW01_07250	0.50	+0.7
1,543,173	-		CSW01_07250	0.55	+0.8
1,543,375	-		CSW01_07250	0.64	-2.7
1,543,377	+		CSW01_07250	0.64	-1.0
1,543,388	+		CSW01_07250	0.65	-1.0
1,543,408	-		CSW01_07250	0.66	+0.3
1,543,436	+		CSW01_07250	0.67	+1.0
1,543,549	+		CSW01_07250	0.72	-1.0
1,543,603	-		CSW01_07250	0.75	-2.9
1,543,603	-		CSW01_07250	0.75	+0.2
1,543,603	-		CSW01_07250	0.75	-0.2
1,543,603	-		CSW01_07250	0.75	-0.2
1,543,603	-		CSW01_07250	0.75	+1.4
1,543,603	-		CSW01_07250	0.75	+2.1
1,543,610	+		CSW01_07250	0.75	-0.2
1,543,668	+		CSW01_07250	0.78	-1.2
1,543,735	+		CSW01_07250	0.81	-0.6
1,543,848	+		CSW01_07250	0.86	+1.6
1,543,856	-		CSW01_07250	0.86	-0.7
1,543,893	+		CSW01_07250	0.88	-2.7
1,543,915	-		CSW01_07250	0.89	-1.1
1,543,982	+				-1.0
1,544,011	-				+0.4
1,544,056	-				+0.6
1,544,056	-				+2.0
1,544,056	-				+0.2
1,544,056	-				+2.0
1,544,056	-				+0.3
1,544,097	-				-2.0
1,544,123	-				+1.0
1,544,345	+		CSW01_07255	0.14	+0.2
1,544,373	-		CSW01_07255	0.16	+0.5
1,544,388	-		CSW01_07255	0.17	-0.9
1,544,391	+		CSW01_07255	0.17	+1.1
1,544,420	-		CSW01_07255	0.19	+1.9
1,544,420	-		CSW01_07255	0.19	+0.3
1,544,443	+		CSW01_07255	0.21	+0.0
1,544,451	-		CSW01_07255	0.21	+1.9
1,544,531	-		CSW01_07255	0.27	-0.2
1,544,553	+		CSW01_07255	0.29	-2.2
1,544,568	+		CSW01_07255	0.30	-0.2
1,544,568	-		CSW01_07255	0.30	-0.2
1,544,729	+		CSW01_07255	0.41	-0.2
1,544,737	-		CSW01_07255	0.42	-2.0
1,544,737	-		CSW01_07255	0.42	-1.7
1,544,854	+		CSW01_07255	0.50	-0.5
1,545,035	-		CSW01_07255	0.63	-1.3