Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07050

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07045 and CSW01_07050 are separated by 78 nucleotidesCSW01_07050 and CSW01_07055 are separated by 181 nucleotides CSW01_07045: CSW01_07045 - methyl-accepting chemotaxis protein, at 1,495,149 to 1,496,840 _07045 CSW01_07050: CSW01_07050 - hypothetical protein, at 1,496,919 to 1,498,235 _07050 CSW01_07055: CSW01_07055 - ATP-dependent helicase, at 1,498,417 to 1,499,610 _07055 Position (kb) 1496 1497 1498 1499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1496.007 kb on + strand, within CSW01_07045at 1496.007 kb on + strand, within CSW01_07045at 1496.015 kb on - strand, within CSW01_07045at 1496.080 kb on + strand, within CSW01_07045at 1496.096 kb on + strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.104 kb on - strand, within CSW01_07045at 1496.154 kb on + strand, within CSW01_07045at 1496.162 kb on - strand, within CSW01_07045at 1496.164 kb on + strand, within CSW01_07045at 1496.164 kb on + strand, within CSW01_07045at 1496.283 kb on + strand, within CSW01_07045at 1496.311 kb on + strand, within CSW01_07045at 1496.319 kb on - strand, within CSW01_07045at 1496.412 kb on + strand, within CSW01_07045at 1496.455 kb on - strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.502 kb on + strand, within CSW01_07045at 1496.510 kb on - strand, within CSW01_07045at 1496.513 kb on + strand, within CSW01_07045at 1496.676 kb on + strandat 1496.702 kb on - strandat 1496.783 kb on - strandat 1496.789 kb on - strandat 1496.897 kb on + strandat 1496.898 kb on - strandat 1496.970 kb on + strandat 1496.973 kb on - strandat 1496.976 kb on + strandat 1496.976 kb on + strandat 1496.993 kb on - strandat 1497.187 kb on + strand, within CSW01_07050at 1497.198 kb on + strand, within CSW01_07050at 1497.266 kb on + strand, within CSW01_07050at 1497.266 kb on + strand, within CSW01_07050at 1497.274 kb on - strand, within CSW01_07050at 1497.276 kb on + strand, within CSW01_07050at 1497.298 kb on + strand, within CSW01_07050at 1497.327 kb on - strand, within CSW01_07050at 1497.407 kb on - strand, within CSW01_07050at 1497.453 kb on + strand, within CSW01_07050at 1497.820 kb on + strand, within CSW01_07050at 1497.820 kb on + strand, within CSW01_07050at 1497.828 kb on - strand, within CSW01_07050at 1497.972 kb on + strand, within CSW01_07050at 1498.018 kb on + strand, within CSW01_07050at 1498.026 kb on - strand, within CSW01_07050at 1498.026 kb on - strand, within CSW01_07050at 1498.105 kb on + strandat 1498.105 kb on + strandat 1498.113 kb on - strandat 1498.134 kb on + strandat 1498.264 kb on + strandat 1498.310 kb on - strandat 1498.374 kb on + strandat 1498.374 kb on + strandat 1498.382 kb on - strandat 1498.390 kb on + strandat 1498.392 kb on - strandat 1498.460 kb on + strandat 1498.460 kb on - strandat 1498.460 kb on - strandat 1498.537 kb on - strand, within CSW01_07055at 1498.537 kb on - strand, within CSW01_07055at 1498.577 kb on + strand, within CSW01_07055at 1498.612 kb on + strand, within CSW01_07055at 1498.612 kb on + strand, within CSW01_07055at 1498.621 kb on - strand, within CSW01_07055at 1498.699 kb on - strand, within CSW01_07055at 1498.717 kb on + strand, within CSW01_07055at 1498.717 kb on + strand, within CSW01_07055at 1498.718 kb on - strand, within CSW01_07055at 1498.792 kb on - strand, within CSW01_07055at 1498.904 kb on - strand, within CSW01_07055at 1498.954 kb on - strand, within CSW01_07055at 1499.074 kb on - strand, within CSW01_07055at 1499.100 kb on + strand, within CSW01_07055

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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1,496,007 + CSW01_07045 0.51 -1.3
1,496,007 + CSW01_07045 0.51 +1.0
1,496,015 - CSW01_07045 0.51 +1.0
1,496,080 + CSW01_07045 0.55 +1.6
1,496,096 + CSW01_07045 0.56 +0.3
1,496,104 - CSW01_07045 0.56 +0.9
1,496,104 - CSW01_07045 0.56 +1.9
1,496,104 - CSW01_07045 0.56 -0.5
1,496,154 + CSW01_07045 0.59 +0.8
1,496,162 - CSW01_07045 0.60 -1.3
1,496,164 + CSW01_07045 0.60 -0.4
1,496,164 + CSW01_07045 0.60 -1.8
1,496,283 + CSW01_07045 0.67 -0.3
1,496,311 + CSW01_07045 0.69 +0.7
1,496,319 - CSW01_07045 0.69 -0.3
1,496,412 + CSW01_07045 0.75 +0.5
1,496,455 - CSW01_07045 0.77 +0.8
1,496,502 + CSW01_07045 0.80 +0.5
1,496,502 + CSW01_07045 0.80 +1.1
1,496,502 + CSW01_07045 0.80 +1.4
1,496,510 - CSW01_07045 0.80 +0.7
1,496,513 + CSW01_07045 0.81 +0.4
1,496,676 + -1.1
1,496,702 - +0.2
1,496,783 - -2.1
1,496,789 - +0.1
1,496,897 + +0.2
1,496,898 - +0.3
1,496,970 + +0.1
1,496,973 - +0.3
1,496,976 + -2.8
1,496,976 + +0.4
1,496,993 - +1.6
1,497,187 + CSW01_07050 0.20 +0.0
1,497,198 + CSW01_07050 0.21 +1.4
1,497,266 + CSW01_07050 0.26 -2.4
1,497,266 + CSW01_07050 0.26 +1.2
1,497,274 - CSW01_07050 0.27 -2.9
1,497,276 + CSW01_07050 0.27 -2.9
1,497,298 + CSW01_07050 0.29 +0.9
1,497,327 - CSW01_07050 0.31 -1.1
1,497,407 - CSW01_07050 0.37 +0.5
1,497,453 + CSW01_07050 0.41 +1.3
1,497,820 + CSW01_07050 0.68 +1.3
1,497,820 + CSW01_07050 0.68 -1.4
1,497,828 - CSW01_07050 0.69 +0.5
1,497,972 + CSW01_07050 0.80 -1.2
1,498,018 + CSW01_07050 0.83 -1.7
1,498,026 - CSW01_07050 0.84 +1.2
1,498,026 - CSW01_07050 0.84 -1.2
1,498,105 + -0.1
1,498,105 + +0.9
1,498,113 - -1.7
1,498,134 + -0.4
1,498,264 + +0.8
1,498,310 - -0.9
1,498,374 + -1.1
1,498,374 + -0.1
1,498,382 - -0.3
1,498,390 + -2.2
1,498,392 - +0.1
1,498,460 + -0.6
1,498,460 - +0.3
1,498,460 - -0.3
1,498,537 - CSW01_07055 0.10 -1.8
1,498,537 - CSW01_07055 0.10 +1.3
1,498,577 + CSW01_07055 0.13 -0.1
1,498,612 + CSW01_07055 0.16 +0.8
1,498,612 + CSW01_07055 0.16 +2.3
1,498,621 - CSW01_07055 0.17 -2.2
1,498,699 - CSW01_07055 0.24 +1.0
1,498,717 + CSW01_07055 0.25 -0.3
1,498,717 + CSW01_07055 0.25 -1.0
1,498,718 - CSW01_07055 0.25 +0.2
1,498,792 - CSW01_07055 0.31 -2.6
1,498,904 - CSW01_07055 0.41 -0.2
1,498,954 - CSW01_07055 0.45 +1.5
1,499,074 - CSW01_07055 0.55 -0.7
1,499,100 + CSW01_07055 0.57 -2.3

Or see this region's nucleotide sequence