Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07045 and CSW01_07050 are separated by 78 nucleotides CSW01_07050 and CSW01_07055 are separated by 181 nucleotides
CSW01_07045: CSW01_07045 - methyl-accepting chemotaxis protein, at 1,495,149 to 1,496,840
_07045
CSW01_07050: CSW01_07050 - hypothetical protein, at 1,496,919 to 1,498,235
_07050
CSW01_07055: CSW01_07055 - ATP-dependent helicase, at 1,498,417 to 1,499,610
_07055
Position (kb)
1496
1497
1498
1499 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1496.007 kb on + strand, within CSW01_07045 at 1496.007 kb on + strand, within CSW01_07045 at 1496.015 kb on - strand, within CSW01_07045 at 1496.080 kb on + strand, within CSW01_07045 at 1496.096 kb on + strand, within CSW01_07045 at 1496.104 kb on - strand, within CSW01_07045 at 1496.104 kb on - strand, within CSW01_07045 at 1496.104 kb on - strand, within CSW01_07045 at 1496.154 kb on + strand, within CSW01_07045 at 1496.162 kb on - strand, within CSW01_07045 at 1496.164 kb on + strand, within CSW01_07045 at 1496.164 kb on + strand, within CSW01_07045 at 1496.283 kb on + strand, within CSW01_07045 at 1496.311 kb on + strand, within CSW01_07045 at 1496.319 kb on - strand, within CSW01_07045 at 1496.412 kb on + strand, within CSW01_07045 at 1496.455 kb on - strand, within CSW01_07045 at 1496.502 kb on + strand, within CSW01_07045 at 1496.502 kb on + strand, within CSW01_07045 at 1496.502 kb on + strand, within CSW01_07045 at 1496.510 kb on - strand, within CSW01_07045 at 1496.513 kb on + strand, within CSW01_07045 at 1496.676 kb on + strand at 1496.702 kb on - strand at 1496.783 kb on - strand at 1496.789 kb on - strand at 1496.897 kb on + strand at 1496.898 kb on - strand at 1496.970 kb on + strand at 1496.973 kb on - strand at 1496.976 kb on + strand at 1496.976 kb on + strand at 1496.993 kb on - strand at 1497.187 kb on + strand, within CSW01_07050 at 1497.198 kb on + strand, within CSW01_07050 at 1497.266 kb on + strand, within CSW01_07050 at 1497.266 kb on + strand, within CSW01_07050 at 1497.274 kb on - strand, within CSW01_07050 at 1497.276 kb on + strand, within CSW01_07050 at 1497.298 kb on + strand, within CSW01_07050 at 1497.327 kb on - strand, within CSW01_07050 at 1497.407 kb on - strand, within CSW01_07050 at 1497.453 kb on + strand, within CSW01_07050 at 1497.820 kb on + strand, within CSW01_07050 at 1497.820 kb on + strand, within CSW01_07050 at 1497.828 kb on - strand, within CSW01_07050 at 1497.972 kb on + strand, within CSW01_07050 at 1498.018 kb on + strand, within CSW01_07050 at 1498.026 kb on - strand, within CSW01_07050 at 1498.026 kb on - strand, within CSW01_07050 at 1498.105 kb on + strand at 1498.105 kb on + strand at 1498.113 kb on - strand at 1498.134 kb on + strand at 1498.264 kb on + strand at 1498.310 kb on - strand at 1498.374 kb on + strand at 1498.374 kb on + strand at 1498.382 kb on - strand at 1498.390 kb on + strand at 1498.392 kb on - strand at 1498.460 kb on + strand at 1498.460 kb on - strand at 1498.460 kb on - strand at 1498.537 kb on - strand, within CSW01_07055 at 1498.537 kb on - strand, within CSW01_07055 at 1498.577 kb on + strand, within CSW01_07055 at 1498.612 kb on + strand, within CSW01_07055 at 1498.612 kb on + strand, within CSW01_07055 at 1498.621 kb on - strand, within CSW01_07055 at 1498.699 kb on - strand, within CSW01_07055 at 1498.717 kb on + strand, within CSW01_07055 at 1498.717 kb on + strand, within CSW01_07055 at 1498.718 kb on - strand, within CSW01_07055 at 1498.792 kb on - strand, within CSW01_07055 at 1498.904 kb on - strand, within CSW01_07055 at 1498.954 kb on - strand, within CSW01_07055 at 1499.074 kb on - strand, within CSW01_07055 at 1499.100 kb on + strand, within CSW01_07055
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 1,496,007 + CSW01_07045 0.51 -1.3 1,496,007 + CSW01_07045 0.51 +1.0 1,496,015 - CSW01_07045 0.51 +1.0 1,496,080 + CSW01_07045 0.55 +1.6 1,496,096 + CSW01_07045 0.56 +0.3 1,496,104 - CSW01_07045 0.56 +0.9 1,496,104 - CSW01_07045 0.56 +1.9 1,496,104 - CSW01_07045 0.56 -0.5 1,496,154 + CSW01_07045 0.59 +0.8 1,496,162 - CSW01_07045 0.60 -1.3 1,496,164 + CSW01_07045 0.60 -0.4 1,496,164 + CSW01_07045 0.60 -1.8 1,496,283 + CSW01_07045 0.67 -0.3 1,496,311 + CSW01_07045 0.69 +0.7 1,496,319 - CSW01_07045 0.69 -0.3 1,496,412 + CSW01_07045 0.75 +0.5 1,496,455 - CSW01_07045 0.77 +0.8 1,496,502 + CSW01_07045 0.80 +0.5 1,496,502 + CSW01_07045 0.80 +1.1 1,496,502 + CSW01_07045 0.80 +1.4 1,496,510 - CSW01_07045 0.80 +0.7 1,496,513 + CSW01_07045 0.81 +0.4 1,496,676 + -1.1 1,496,702 - +0.2 1,496,783 - -2.1 1,496,789 - +0.1 1,496,897 + +0.2 1,496,898 - +0.3 1,496,970 + +0.1 1,496,973 - +0.3 1,496,976 + -2.8 1,496,976 + +0.4 1,496,993 - +1.6 1,497,187 + CSW01_07050 0.20 +0.0 1,497,198 + CSW01_07050 0.21 +1.4 1,497,266 + CSW01_07050 0.26 -2.4 1,497,266 + CSW01_07050 0.26 +1.2 1,497,274 - CSW01_07050 0.27 -2.9 1,497,276 + CSW01_07050 0.27 -2.9 1,497,298 + CSW01_07050 0.29 +0.9 1,497,327 - CSW01_07050 0.31 -1.1 1,497,407 - CSW01_07050 0.37 +0.5 1,497,453 + CSW01_07050 0.41 +1.3 1,497,820 + CSW01_07050 0.68 +1.3 1,497,820 + CSW01_07050 0.68 -1.4 1,497,828 - CSW01_07050 0.69 +0.5 1,497,972 + CSW01_07050 0.80 -1.2 1,498,018 + CSW01_07050 0.83 -1.7 1,498,026 - CSW01_07050 0.84 +1.2 1,498,026 - CSW01_07050 0.84 -1.2 1,498,105 + -0.1 1,498,105 + +0.9 1,498,113 - -1.7 1,498,134 + -0.4 1,498,264 + +0.8 1,498,310 - -0.9 1,498,374 + -1.1 1,498,374 + -0.1 1,498,382 - -0.3 1,498,390 + -2.2 1,498,392 - +0.1 1,498,460 + -0.6 1,498,460 - +0.3 1,498,460 - -0.3 1,498,537 - CSW01_07055 0.10 -1.8 1,498,537 - CSW01_07055 0.10 +1.3 1,498,577 + CSW01_07055 0.13 -0.1 1,498,612 + CSW01_07055 0.16 +0.8 1,498,612 + CSW01_07055 0.16 +2.3 1,498,621 - CSW01_07055 0.17 -2.2 1,498,699 - CSW01_07055 0.24 +1.0 1,498,717 + CSW01_07055 0.25 -0.3 1,498,717 + CSW01_07055 0.25 -1.0 1,498,718 - CSW01_07055 0.25 +0.2 1,498,792 - CSW01_07055 0.31 -2.6 1,498,904 - CSW01_07055 0.41 -0.2 1,498,954 - CSW01_07055 0.45 +1.5 1,499,074 - CSW01_07055 0.55 -0.7 1,499,100 + CSW01_07055 0.57 -2.3
Or see this region's nucleotide sequence