Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04930

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04920 and CSW01_04925 are separated by 112 nucleotidesCSW01_04925 and CSW01_04930 are separated by 108 nucleotidesCSW01_04930 and CSW01_04935 are separated by 133 nucleotidesCSW01_04935 and CSW01_04940 are separated by 84 nucleotidesCSW01_04940 and CSW01_04945 are separated by 3 nucleotides CSW01_04920: CSW01_04920 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,026,576 to 1,027,769 _04920 CSW01_04925: CSW01_04925 - PTS glucose transporter subunit IIA, at 1,027,882 to 1,028,391 _04925 CSW01_04930: CSW01_04930 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 1,028,500 to 1,030,221 _04930 CSW01_04935: CSW01_04935 - phosphocarrier protein HPr, at 1,030,355 to 1,030,612 _04935 CSW01_04940: CSW01_04940 - hypothetical protein, at 1,030,697 to 1,030,906 _04940 CSW01_04945: CSW01_04945 - cysteine synthase A, at 1,030,910 to 1,031,878 _04945 Position (kb) 1028 1029 1030 1031Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1027.742 kb on + strandat 1027.757 kb on - strandat 1027.833 kb on + strandat 1027.969 kb on - strand, within CSW01_04925at 1028.138 kb on - strand, within CSW01_04925at 1028.393 kb on + strandat 1028.401 kb on + strandat 1028.433 kb on + strandat 1028.518 kb on + strandat 1028.549 kb on + strandat 1028.842 kb on + strand, within CSW01_04930at 1028.850 kb on - strand, within CSW01_04930at 1028.907 kb on - strand, within CSW01_04930at 1028.990 kb on + strand, within CSW01_04930at 1028.998 kb on - strand, within CSW01_04930at 1028.998 kb on - strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.075 kb on + strand, within CSW01_04930at 1029.114 kb on + strand, within CSW01_04930at 1029.126 kb on + strand, within CSW01_04930at 1029.134 kb on - strand, within CSW01_04930at 1029.134 kb on - strand, within CSW01_04930at 1029.144 kb on + strand, within CSW01_04930at 1029.237 kb on - strand, within CSW01_04930at 1029.419 kb on - strand, within CSW01_04930at 1029.627 kb on + strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.635 kb on - strand, within CSW01_04930at 1029.704 kb on + strand, within CSW01_04930at 1030.088 kb on + strandat 1030.096 kb on - strandat 1030.096 kb on - strandat 1030.096 kb on - strandat 1030.170 kb on + strandat 1030.228 kb on + strandat 1030.236 kb on - strandat 1030.281 kb on - strandat 1030.309 kb on - strandat 1030.440 kb on + strand, within CSW01_04935at 1030.450 kb on + strand, within CSW01_04935at 1030.725 kb on - strand, within CSW01_04940at 1030.778 kb on + strand, within CSW01_04940at 1031.061 kb on + strand, within CSW01_04945at 1031.084 kb on - strand, within CSW01_04945at 1031.217 kb on + strand, within CSW01_04945

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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1,027,742 + +0.6
1,027,757 - -0.2
1,027,833 + +1.0
1,027,969 - CSW01_04925 0.17 +1.2
1,028,138 - CSW01_04925 0.50 +0.6
1,028,393 + +2.8
1,028,401 + +3.0
1,028,433 + -1.2
1,028,518 + +0.1
1,028,549 + -0.7
1,028,842 + CSW01_04930 0.20 -1.4
1,028,850 - CSW01_04930 0.20 -1.7
1,028,907 - CSW01_04930 0.24 -1.4
1,028,990 + CSW01_04930 0.28 -2.0
1,028,998 - CSW01_04930 0.29 -0.9
1,028,998 - CSW01_04930 0.29 -0.3
1,029,075 + CSW01_04930 0.33 -0.2
1,029,075 + CSW01_04930 0.33 +0.9
1,029,075 + CSW01_04930 0.33 -1.0
1,029,114 + CSW01_04930 0.36 -0.1
1,029,126 + CSW01_04930 0.36 -2.2
1,029,134 - CSW01_04930 0.37 -0.9
1,029,134 - CSW01_04930 0.37 -2.5
1,029,144 + CSW01_04930 0.37 +0.7
1,029,237 - CSW01_04930 0.43 -0.9
1,029,419 - CSW01_04930 0.53 -0.4
1,029,627 + CSW01_04930 0.65 -0.6
1,029,635 - CSW01_04930 0.66 -2.7
1,029,635 - CSW01_04930 0.66 -1.1
1,029,635 - CSW01_04930 0.66 -0.4
1,029,635 - CSW01_04930 0.66 +0.5
1,029,635 - CSW01_04930 0.66 -1.2
1,029,635 - CSW01_04930 0.66 -0.3
1,029,635 - CSW01_04930 0.66 -1.1
1,029,704 + CSW01_04930 0.70 -1.8
1,030,088 + +0.3
1,030,096 - -1.7
1,030,096 - +1.2
1,030,096 - +1.6
1,030,170 + +0.4
1,030,228 + +1.3
1,030,236 - -2.0
1,030,281 - +0.9
1,030,309 - +1.5
1,030,440 + CSW01_04935 0.33 +2.5
1,030,450 + CSW01_04935 0.37 +3.1
1,030,725 - CSW01_04940 0.13 -1.7
1,030,778 + CSW01_04940 0.39 -3.9
1,031,061 + CSW01_04945 0.16 +1.1
1,031,084 - CSW01_04945 0.18 -2.3
1,031,217 + CSW01_04945 0.32 +0.2

Or see this region's nucleotide sequence