Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04585

Experiment: ICP1_phage_0.23_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04580 and CSW01_04585 are separated by 303 nucleotidesCSW01_04585 and CSW01_04590 are separated by 620 nucleotides CSW01_04580: CSW01_04580 - flagellar motor protein MotB, at 950,421 to 951,377 _04580 CSW01_04585: CSW01_04585 - tRNA 4-thiouridine(8) synthase ThiI, at 951,681 to 953,132 _04585 CSW01_04590: CSW01_04590 - transcriptional regulator GcvA, at 953,753 to 954,673 _04590 Position (kb) 951 952 953 954Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 950.715 kb on - strand, within CSW01_04580at 950.744 kb on + strand, within CSW01_04580at 950.752 kb on - strand, within CSW01_04580at 950.779 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.808 kb on + strand, within CSW01_04580at 950.865 kb on + strand, within CSW01_04580at 950.875 kb on + strand, within CSW01_04580at 950.885 kb on + strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.921 kb on + strand, within CSW01_04580at 950.960 kb on - strand, within CSW01_04580at 951.013 kb on - strand, within CSW01_04580at 951.127 kb on + strand, within CSW01_04580at 951.135 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.145 kb on - strand, within CSW01_04580at 951.165 kb on - strand, within CSW01_04580at 951.308 kb on + strandat 951.333 kb on + strandat 951.340 kb on + strandat 951.340 kb on - strandat 951.391 kb on - strandat 951.519 kb on - strandat 951.941 kb on + strand, within CSW01_04585at 951.997 kb on + strand, within CSW01_04585at 952.085 kb on - strand, within CSW01_04585at 952.090 kb on - strand, within CSW01_04585at 952.117 kb on - strand, within CSW01_04585at 952.122 kb on - strand, within CSW01_04585at 952.182 kb on + strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.215 kb on + strand, within CSW01_04585at 952.290 kb on + strand, within CSW01_04585at 952.301 kb on - strand, within CSW01_04585at 952.350 kb on + strand, within CSW01_04585at 952.452 kb on + strand, within CSW01_04585at 952.460 kb on - strand, within CSW01_04585at 952.566 kb on - strand, within CSW01_04585at 952.569 kb on + strand, within CSW01_04585at 952.649 kb on + strand, within CSW01_04585at 952.808 kb on + strand, within CSW01_04585at 952.896 kb on - strand, within CSW01_04585at 952.898 kb on + strand, within CSW01_04585at 952.898 kb on + strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 952.906 kb on - strand, within CSW01_04585at 953.036 kb on - strandat 953.094 kb on + strandat 953.094 kb on + strandat 953.094 kb on + strandat 953.232 kb on + strandat 953.240 kb on - strandat 953.240 kb on - strandat 953.250 kb on - strandat 953.270 kb on - strandat 953.333 kb on - strandat 953.476 kb on - strandat 953.653 kb on - strandat 953.751 kb on - strandat 953.928 kb on + strand, within CSW01_04590at 954.040 kb on + strand, within CSW01_04590at 954.088 kb on - strand, within CSW01_04590at 954.117 kb on + strand, within CSW01_04590at 954.117 kb on + strand, within CSW01_04590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
remove
950,715 - CSW01_04580 0.31 +0.5
950,744 + CSW01_04580 0.34 -1.2
950,752 - CSW01_04580 0.35 -3.2
950,779 + CSW01_04580 0.37 -1.6
950,789 + CSW01_04580 0.38 -2.1
950,789 + CSW01_04580 0.38 -1.6
950,797 - CSW01_04580 0.39 -1.0
950,797 - CSW01_04580 0.39 +1.4
950,797 - CSW01_04580 0.39 -1.3
950,808 + CSW01_04580 0.40 -1.3
950,865 + CSW01_04580 0.46 -2.1
950,875 + CSW01_04580 0.47 -2.2
950,885 + CSW01_04580 0.48 +0.5
950,893 - CSW01_04580 0.49 -0.4
950,893 - CSW01_04580 0.49 -0.7
950,921 + CSW01_04580 0.52 -4.2
950,960 - CSW01_04580 0.56 +0.6
951,013 - CSW01_04580 0.62 -2.6
951,127 + CSW01_04580 0.74 -4.6
951,135 - CSW01_04580 0.75 -1.5
951,140 - CSW01_04580 0.75 -0.5
951,140 - CSW01_04580 0.75 -1.3
951,145 - CSW01_04580 0.76 -0.5
951,165 - CSW01_04580 0.78 -2.1
951,308 + +0.3
951,333 + -3.1
951,340 + -0.1
951,340 - -2.6
951,391 - -4.3
951,519 - -0.3
951,941 + CSW01_04585 0.18 +1.2
951,997 + CSW01_04585 0.22 +2.1
952,085 - CSW01_04585 0.28 +0.6
952,090 - CSW01_04585 0.28 +1.0
952,117 - CSW01_04585 0.30 +1.7
952,122 - CSW01_04585 0.30 +1.7
952,182 + CSW01_04585 0.35 -0.1
952,190 - CSW01_04585 0.35 +1.7
952,190 - CSW01_04585 0.35 -0.2
952,215 + CSW01_04585 0.37 -0.9
952,290 + CSW01_04585 0.42 -2.4
952,301 - CSW01_04585 0.43 +1.0
952,350 + CSW01_04585 0.46 +2.6
952,452 + CSW01_04585 0.53 +1.3
952,460 - CSW01_04585 0.54 +1.1
952,566 - CSW01_04585 0.61 +0.6
952,569 + CSW01_04585 0.61 +1.4
952,649 + CSW01_04585 0.67 +2.2
952,808 + CSW01_04585 0.78 +0.4
952,896 - CSW01_04585 0.84 +0.8
952,898 + CSW01_04585 0.84 +1.0
952,898 + CSW01_04585 0.84 -1.1
952,906 - CSW01_04585 0.84 +1.8
952,906 - CSW01_04585 0.84 +1.7
952,906 - CSW01_04585 0.84 +0.7
952,906 - CSW01_04585 0.84 +0.1
952,906 - CSW01_04585 0.84 -2.4
953,036 - +1.6
953,094 + +0.3
953,094 + +1.1
953,094 + +1.0
953,232 + +0.8
953,240 - -3.0
953,240 - -0.6
953,250 - -0.9
953,270 - +0.5
953,333 - +0.8
953,476 - +0.2
953,653 - -1.5
953,751 - +0.4
953,928 + CSW01_04590 0.19 +0.7
954,040 + CSW01_04590 0.31 +0.4
954,088 - CSW01_04590 0.36 -0.3
954,117 + CSW01_04590 0.40 +0.0
954,117 + CSW01_04590 0.40 -3.6

Or see this region's nucleotide sequence