Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04580

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04575 and CSW01_04580 are separated by 11 nucleotidesCSW01_04580 and CSW01_04585 are separated by 303 nucleotides CSW01_04575: CSW01_04575 - flagellar motor protein PomA, at 949,645 to 950,409 _04575 CSW01_04580: CSW01_04580 - flagellar motor protein MotB, at 950,421 to 951,377 _04580 CSW01_04585: CSW01_04585 - tRNA 4-thiouridine(8) synthase ThiI, at 951,681 to 953,132 _04585 Position (kb) 950 951 952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 949.430 kb on - strandat 949.479 kb on + strandat 949.488 kb on - strandat 949.503 kb on + strandat 949.503 kb on - strandat 949.548 kb on - strandat 949.713 kb on - strandat 949.713 kb on - strandat 949.799 kb on - strand, within CSW01_04575at 949.831 kb on + strand, within CSW01_04575at 949.837 kb on + strand, within CSW01_04575at 949.845 kb on + strand, within CSW01_04575at 949.845 kb on + strand, within CSW01_04575at 949.875 kb on - strand, within CSW01_04575at 949.951 kb on - strand, within CSW01_04575at 949.966 kb on + strand, within CSW01_04575at 949.980 kb on + strand, within CSW01_04575at 949.999 kb on + strand, within CSW01_04575at 950.007 kb on - strand, within CSW01_04575at 950.015 kb on - strand, within CSW01_04575at 950.040 kb on - strand, within CSW01_04575at 950.117 kb on - strand, within CSW01_04575at 950.121 kb on + strand, within CSW01_04575at 950.179 kb on - strand, within CSW01_04575at 950.193 kb on + strand, within CSW01_04575at 950.200 kb on + strand, within CSW01_04575at 950.200 kb on + strand, within CSW01_04575at 950.208 kb on - strand, within CSW01_04575at 950.333 kb on + strandat 950.333 kb on + strandat 950.333 kb on + strandat 950.333 kb on + strandat 950.334 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.341 kb on - strandat 950.507 kb on - strandat 950.507 kb on - strandat 950.668 kb on + strand, within CSW01_04580at 950.715 kb on - strand, within CSW01_04580at 950.744 kb on + strand, within CSW01_04580at 950.752 kb on - strand, within CSW01_04580at 950.779 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.789 kb on + strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.797 kb on - strand, within CSW01_04580at 950.808 kb on + strand, within CSW01_04580at 950.865 kb on + strand, within CSW01_04580at 950.875 kb on + strand, within CSW01_04580at 950.885 kb on + strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.893 kb on - strand, within CSW01_04580at 950.921 kb on + strand, within CSW01_04580at 950.960 kb on - strand, within CSW01_04580at 951.013 kb on - strand, within CSW01_04580at 951.127 kb on + strand, within CSW01_04580at 951.135 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.140 kb on - strand, within CSW01_04580at 951.145 kb on - strand, within CSW01_04580at 951.165 kb on - strand, within CSW01_04580at 951.308 kb on + strandat 951.333 kb on + strandat 951.340 kb on + strandat 951.340 kb on - strandat 951.391 kb on - strandat 951.519 kb on - strandat 951.941 kb on + strand, within CSW01_04585at 951.997 kb on + strand, within CSW01_04585at 952.085 kb on - strand, within CSW01_04585at 952.090 kb on - strand, within CSW01_04585at 952.117 kb on - strand, within CSW01_04585at 952.122 kb on - strand, within CSW01_04585at 952.182 kb on + strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.190 kb on - strand, within CSW01_04585at 952.215 kb on + strand, within CSW01_04585at 952.290 kb on + strand, within CSW01_04585at 952.301 kb on - strand, within CSW01_04585at 952.350 kb on + strand, within CSW01_04585

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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949,430 - -0.4
949,479 + -1.2
949,488 - -0.1
949,503 + -0.3
949,503 - +0.1
949,548 - -3.4
949,713 - -3.4
949,713 - -0.1
949,799 - CSW01_04575 0.20 -0.9
949,831 + CSW01_04575 0.24 +0.3
949,837 + CSW01_04575 0.25 -2.7
949,845 + CSW01_04575 0.26 -1.5
949,845 + CSW01_04575 0.26 -3.8
949,875 - CSW01_04575 0.30 -1.7
949,951 - CSW01_04575 0.40 +0.6
949,966 + CSW01_04575 0.42 -0.5
949,980 + CSW01_04575 0.44 -1.1
949,999 + CSW01_04575 0.46 -2.4
950,007 - CSW01_04575 0.47 +1.4
950,015 - CSW01_04575 0.48 -0.4
950,040 - CSW01_04575 0.52 -2.5
950,117 - CSW01_04575 0.62 +0.1
950,121 + CSW01_04575 0.62 +1.4
950,179 - CSW01_04575 0.70 -3.6
950,193 + CSW01_04575 0.72 -1.2
950,200 + CSW01_04575 0.73 -0.5
950,200 + CSW01_04575 0.73 -0.7
950,208 - CSW01_04575 0.74 -1.5
950,333 + -1.7
950,333 + +1.2
950,333 + +0.3
950,333 + +0.3
950,334 - -3.9
950,341 - -1.0
950,341 - -2.5
950,341 - -2.1
950,341 - -3.3
950,341 - -0.4
950,341 - -2.4
950,507 - -0.9
950,507 - +0.3
950,668 + CSW01_04580 0.26 +0.2
950,715 - CSW01_04580 0.31 +0.5
950,744 + CSW01_04580 0.34 -1.2
950,752 - CSW01_04580 0.35 -3.2
950,779 + CSW01_04580 0.37 -1.6
950,789 + CSW01_04580 0.38 -2.1
950,789 + CSW01_04580 0.38 -1.6
950,797 - CSW01_04580 0.39 -1.0
950,797 - CSW01_04580 0.39 +1.4
950,797 - CSW01_04580 0.39 -1.3
950,808 + CSW01_04580 0.40 -1.3
950,865 + CSW01_04580 0.46 -2.1
950,875 + CSW01_04580 0.47 -2.2
950,885 + CSW01_04580 0.48 +0.5
950,893 - CSW01_04580 0.49 -0.4
950,893 - CSW01_04580 0.49 -0.7
950,921 + CSW01_04580 0.52 -4.2
950,960 - CSW01_04580 0.56 +0.6
951,013 - CSW01_04580 0.62 -2.6
951,127 + CSW01_04580 0.74 -4.6
951,135 - CSW01_04580 0.75 -1.5
951,140 - CSW01_04580 0.75 -0.5
951,140 - CSW01_04580 0.75 -1.3
951,145 - CSW01_04580 0.76 -0.5
951,165 - CSW01_04580 0.78 -2.1
951,308 + +0.3
951,333 + -3.1
951,340 + -0.1
951,340 - -2.6
951,391 - -4.3
951,519 - -0.3
951,941 + CSW01_04585 0.18 +1.2
951,997 + CSW01_04585 0.22 +2.1
952,085 - CSW01_04585 0.28 +0.6
952,090 - CSW01_04585 0.28 +1.0
952,117 - CSW01_04585 0.30 +1.7
952,122 - CSW01_04585 0.30 +1.7
952,182 + CSW01_04585 0.35 -0.1
952,190 - CSW01_04585 0.35 +1.7
952,190 - CSW01_04585 0.35 -0.2
952,215 + CSW01_04585 0.37 -0.9
952,290 + CSW01_04585 0.42 -2.4
952,301 - CSW01_04585 0.43 +1.0
952,350 + CSW01_04585 0.46 +2.6

Or see this region's nucleotide sequence