Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04415 and CSW01_04420 are separated by 49 nucleotides CSW01_04420 and CSW01_04425 are separated by 54 nucleotides CSW01_04425 and CSW01_04430 overlap by 32 nucleotides
CSW01_04415: CSW01_04415 - molecular chaperone DnaJ, at 921,270 to 922,415
_04415
CSW01_04420: CSW01_04420 - prepilin-type cleavage/methylation domain-containing protein, at 922,465 to 922,908
_04420
CSW01_04425: CSW01_04425 - general secretion pathway protein GspH, at 922,963 to 923,517
_04425
CSW01_04430: CSW01_04430 - pilus assembly protein PilW, at 923,486 to 924,088
_04430
Position (kb) 922
923 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 922.312 kb on + strand at 922.355 kb on + strand at 922.370 kb on - strand at 922.520 kb on + strand, within CSW01_04420 at 922.520 kb on + strand, within CSW01_04420 at 922.788 kb on - strand, within CSW01_04420 at 923.013 kb on + strand at 923.192 kb on - strand, within CSW01_04425 at 923.211 kb on + strand, within CSW01_04425 at 923.217 kb on + strand, within CSW01_04425 at 923.244 kb on + strand, within CSW01_04425 at 923.247 kb on - strand, within CSW01_04425 at 923.260 kb on - strand, within CSW01_04425 at 923.293 kb on - strand, within CSW01_04425 at 923.303 kb on - strand, within CSW01_04425 at 923.342 kb on - strand, within CSW01_04425 at 923.352 kb on + strand, within CSW01_04425 at 923.368 kb on + strand, within CSW01_04425 at 923.446 kb on + strand, within CSW01_04425 at 923.446 kb on + strand, within CSW01_04425 at 923.457 kb on + strand, within CSW01_04425 at 923.526 kb on + strand at 923.526 kb on + strand at 923.534 kb on - strand at 923.534 kb on - strand at 923.534 kb on - strand at 923.581 kb on - strand, within CSW01_04430 at 923.581 kb on - strand, within CSW01_04430 at 923.584 kb on + strand, within CSW01_04430 at 923.621 kb on + strand, within CSW01_04430 at 923.664 kb on + strand, within CSW01_04430 at 923.664 kb on + strand, within CSW01_04430 at 923.672 kb on - strand, within CSW01_04430 at 923.672 kb on - strand, within CSW01_04430 at 923.702 kb on + strand, within CSW01_04430 at 923.702 kb on + strand, within CSW01_04430 at 923.710 kb on - strand, within CSW01_04430 at 923.710 kb on - strand, within CSW01_04430 at 923.737 kb on + strand, within CSW01_04430 at 923.745 kb on - strand, within CSW01_04430 at 923.755 kb on + strand, within CSW01_04430 at 923.763 kb on - strand, within CSW01_04430 at 923.872 kb on - strand, within CSW01_04430 at 923.873 kb on + strand, within CSW01_04430 at 923.881 kb on - strand, within CSW01_04430 at 923.883 kb on + strand, within CSW01_04430 at 923.883 kb on + strand, within CSW01_04430 at 923.883 kb on + strand, within CSW01_04430 at 923.883 kb on + strand, within CSW01_04430 at 923.887 kb on + strand, within CSW01_04430 at 923.891 kb on - strand, within CSW01_04430 at 923.891 kb on - strand, within CSW01_04430 at 923.891 kb on - strand, within CSW01_04430 at 923.891 kb on - strand, within CSW01_04430
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 922,312 + -3.6 922,355 + +1.2 922,370 - -1.0 922,520 + CSW01_04420 0.12 -0.0 922,520 + CSW01_04420 0.12 -2.0 922,788 - CSW01_04420 0.73 -1.2 923,013 + +0.6 923,192 - CSW01_04425 0.41 +1.6 923,211 + CSW01_04425 0.45 +1.2 923,217 + CSW01_04425 0.46 +0.1 923,244 + CSW01_04425 0.51 +1.7 923,247 - CSW01_04425 0.51 +0.6 923,260 - CSW01_04425 0.54 +0.7 923,293 - CSW01_04425 0.59 -0.2 923,303 - CSW01_04425 0.61 -1.6 923,342 - CSW01_04425 0.68 -0.3 923,352 + CSW01_04425 0.70 -1.9 923,368 + CSW01_04425 0.73 +1.4 923,446 + CSW01_04425 0.87 -1.6 923,446 + CSW01_04425 0.87 +1.1 923,457 + CSW01_04425 0.89 -0.6 923,526 + +0.9 923,526 + -0.2 923,534 - -3.9 923,534 - -2.1 923,534 - -0.5 923,581 - CSW01_04430 0.16 -0.6 923,581 - CSW01_04430 0.16 -1.7 923,584 + CSW01_04430 0.16 -1.5 923,621 + CSW01_04430 0.22 -1.5 923,664 + CSW01_04430 0.30 +1.6 923,664 + CSW01_04430 0.30 -0.2 923,672 - CSW01_04430 0.31 +0.3 923,672 - CSW01_04430 0.31 +1.2 923,702 + CSW01_04430 0.36 -0.2 923,702 + CSW01_04430 0.36 +1.4 923,710 - CSW01_04430 0.37 -1.0 923,710 - CSW01_04430 0.37 +0.6 923,737 + CSW01_04430 0.42 +0.6 923,745 - CSW01_04430 0.43 -2.9 923,755 + CSW01_04430 0.45 +0.8 923,763 - CSW01_04430 0.46 +1.3 923,872 - CSW01_04430 0.64 -1.2 923,873 + CSW01_04430 0.64 +0.4 923,881 - CSW01_04430 0.66 +0.2 923,883 + CSW01_04430 0.66 +0.3 923,883 + CSW01_04430 0.66 -0.4 923,883 + CSW01_04430 0.66 +0.3 923,883 + CSW01_04430 0.66 -2.0 923,887 + CSW01_04430 0.67 -0.2 923,891 - CSW01_04430 0.67 +1.1 923,891 - CSW01_04430 0.67 -0.1 923,891 - CSW01_04430 0.67 +0.3 923,891 - CSW01_04430 0.67 +1.2
Or see this region's nucleotide sequence