Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04140 and CSW01_04145 are separated by 346 nucleotides CSW01_04145 and CSW01_04150 are separated by 74 nucleotides CSW01_04150 and CSW01_04155 are separated by 178 nucleotides CSW01_04155 and CSW01_04160 are separated by 246 nucleotides
CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184
_04140
CSW01_04145: CSW01_04145 - transporter, at 857,531 to 857,929
_04145
CSW01_04150: CSW01_04150 - RNA methyltransferase, at 858,004 to 858,777
_04150
CSW01_04155: CSW01_04155 - ferredoxin family protein, at 858,956 to 859,279
_04155
CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142
_04160
Position (kb) 858
859 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 857.061 kb on + strand, within CSW01_04140 at 857.084 kb on - strand, within CSW01_04140 at 857.100 kb on + strand at 857.165 kb on + strand at 857.178 kb on + strand at 857.178 kb on + strand at 857.186 kb on - strand at 857.221 kb on - strand at 857.482 kb on + strand at 857.602 kb on + strand, within CSW01_04145 at 857.610 kb on - strand, within CSW01_04145 at 857.612 kb on + strand, within CSW01_04145 at 857.648 kb on - strand, within CSW01_04145 at 857.675 kb on + strand, within CSW01_04145 at 857.689 kb on + strand, within CSW01_04145 at 857.720 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.751 kb on + strand, within CSW01_04145 at 857.759 kb on - strand, within CSW01_04145 at 857.759 kb on - strand, within CSW01_04145 at 857.759 kb on - strand, within CSW01_04145 at 857.772 kb on - strand, within CSW01_04145 at 857.783 kb on + strand, within CSW01_04145 at 857.810 kb on - strand, within CSW01_04145 at 857.829 kb on + strand, within CSW01_04145 at 857.854 kb on - strand, within CSW01_04145 at 857.932 kb on - strand at 857.991 kb on - strand at 857.993 kb on - strand at 857.993 kb on - strand at 857.993 kb on - strand at 858.085 kb on - strand, within CSW01_04150 at 858.085 kb on - strand, within CSW01_04150 at 858.096 kb on + strand, within CSW01_04150 at 858.104 kb on - strand, within CSW01_04150 at 858.110 kb on + strand, within CSW01_04150 at 858.111 kb on - strand, within CSW01_04150 at 858.118 kb on - strand, within CSW01_04150 at 858.141 kb on + strand, within CSW01_04150 at 858.150 kb on + strand, within CSW01_04150 at 858.244 kb on - strand, within CSW01_04150 at 858.330 kb on + strand, within CSW01_04150 at 858.337 kb on + strand, within CSW01_04150 at 858.351 kb on - strand, within CSW01_04150 at 858.465 kb on + strand, within CSW01_04150 at 858.489 kb on + strand, within CSW01_04150 at 858.502 kb on - strand, within CSW01_04150 at 858.581 kb on + strand, within CSW01_04150 at 858.588 kb on - strand, within CSW01_04150 at 858.590 kb on - strand, within CSW01_04150 at 858.655 kb on - strand, within CSW01_04150 at 858.672 kb on - strand, within CSW01_04150 at 858.692 kb on - strand, within CSW01_04150 at 858.720 kb on - strand at 858.902 kb on + strand at 858.902 kb on + strand at 858.902 kb on + strand at 858.935 kb on - strand at 859.036 kb on + strand, within CSW01_04155 at 859.044 kb on - strand, within CSW01_04155 at 859.155 kb on - strand, within CSW01_04155 at 859.188 kb on - strand, within CSW01_04155 at 859.230 kb on - strand, within CSW01_04155 at 859.230 kb on - strand, within CSW01_04155 at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.315 kb on + strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.321 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.323 kb on - strand at 859.423 kb on + strand at 859.494 kb on + strand at 859.504 kb on + strand at 859.512 kb on - strand at 859.542 kb on + strand at 859.579 kb on + strand at 859.579 kb on + strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.587 kb on - strand at 859.637 kb on - strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.639 kb on + strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.647 kb on - strand at 859.658 kb on - strand at 859.684 kb on + strand at 859.684 kb on + strand at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160 at 859.692 kb on - strand, within CSW01_04160
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 857,061 + CSW01_04140 0.87 +1.5 857,084 - CSW01_04140 0.89 +1.1 857,100 + +0.8 857,165 + +1.3 857,178 + +2.2 857,178 + +1.2 857,186 - +1.2 857,221 - -0.4 857,482 + -2.8 857,602 + CSW01_04145 0.18 -2.5 857,610 - CSW01_04145 0.20 +1.7 857,612 + CSW01_04145 0.20 +0.5 857,648 - CSW01_04145 0.29 +0.6 857,675 + CSW01_04145 0.36 -0.9 857,689 + CSW01_04145 0.40 -0.6 857,720 + CSW01_04145 0.47 +0.5 857,751 + CSW01_04145 0.55 +0.4 857,751 + CSW01_04145 0.55 -0.3 857,751 + CSW01_04145 0.55 -0.8 857,751 + CSW01_04145 0.55 -2.7 857,751 + CSW01_04145 0.55 +0.2 857,751 + CSW01_04145 0.55 +1.1 857,759 - CSW01_04145 0.57 -0.6 857,759 - CSW01_04145 0.57 +1.0 857,759 - CSW01_04145 0.57 -1.5 857,772 - CSW01_04145 0.60 -4.7 857,783 + CSW01_04145 0.63 +0.3 857,810 - CSW01_04145 0.70 +0.0 857,829 + CSW01_04145 0.75 +0.6 857,854 - CSW01_04145 0.81 -0.5 857,932 - -1.4 857,991 - -3.0 857,993 - +0.5 857,993 - -1.4 857,993 - -1.0 858,085 - CSW01_04150 0.10 +0.2 858,085 - CSW01_04150 0.10 -1.7 858,096 + CSW01_04150 0.12 -1.9 858,104 - CSW01_04150 0.13 +0.2 858,110 + CSW01_04150 0.14 -0.2 858,111 - CSW01_04150 0.14 -0.7 858,118 - CSW01_04150 0.15 -1.0 858,141 + CSW01_04150 0.18 +0.9 858,150 + CSW01_04150 0.19 -0.9 858,244 - CSW01_04150 0.31 -2.8 858,330 + CSW01_04150 0.42 -0.9 858,337 + CSW01_04150 0.43 +1.2 858,351 - CSW01_04150 0.45 -1.4 858,465 + CSW01_04150 0.60 -2.9 858,489 + CSW01_04150 0.63 -0.9 858,502 - CSW01_04150 0.64 -2.4 858,581 + CSW01_04150 0.75 +0.2 858,588 - CSW01_04150 0.75 -0.7 858,590 - CSW01_04150 0.76 -1.0 858,655 - CSW01_04150 0.84 -1.4 858,672 - CSW01_04150 0.86 -1.2 858,692 - CSW01_04150 0.89 -2.2 858,720 - -0.4 858,902 + -3.5 858,902 + +1.0 858,902 + -0.4 858,935 - +0.4 859,036 + CSW01_04155 0.25 +0.5 859,044 - CSW01_04155 0.27 -2.1 859,155 - CSW01_04155 0.61 -1.0 859,188 - CSW01_04155 0.72 -2.2 859,230 - CSW01_04155 0.85 +1.4 859,230 - CSW01_04155 0.85 +0.6 859,315 + +1.1 859,315 + +1.5 859,315 + +0.7 859,315 + -0.4 859,315 + -2.4 859,321 - +1.8 859,321 - +0.9 859,321 - -0.6 859,321 - +1.2 859,323 - -0.9 859,323 - -1.6 859,323 - +1.4 859,323 - -1.0 859,323 - +1.8 859,323 - -1.4 859,323 - +1.5 859,423 + -2.4 859,494 + +1.1 859,504 + +2.0 859,512 - +0.6 859,542 + -1.4 859,579 + -2.6 859,579 + -1.0 859,587 - -2.4 859,587 - +0.2 859,587 - -0.1 859,587 - -0.8 859,637 - -2.4 859,639 + +0.0 859,639 + +0.9 859,639 + +1.1 859,639 + -2.5 859,639 + +1.1 859,639 + -2.2 859,639 + +0.1 859,639 + +0.1 859,639 + +1.3 859,639 + -1.2 859,639 + +0.4 859,639 + -1.1 859,639 + -3.5 859,639 + -0.1 859,639 + -2.6 859,639 + -1.4 859,639 + -3.6 859,639 + -0.9 859,639 + -0.6 859,639 + -2.6 859,639 + +0.4 859,639 + +1.3 859,639 + -2.4 859,639 + -0.9 859,647 - +1.2 859,647 - -1.1 859,647 - -2.0 859,647 - -1.1 859,647 - -0.5 859,647 - -3.8 859,647 - +1.0 859,647 - +0.8 859,647 - +1.1 859,647 - -2.6 859,647 - +1.9 859,647 - +0.6 859,647 - +0.5 859,647 - -0.9 859,647 - +0.4 859,647 - +0.4 859,647 - -2.0 859,647 - +0.3 859,647 - +0.1 859,647 - -2.9 859,647 - +2.1 859,647 - +0.9 859,658 - -3.6 859,684 + +4.3 859,684 + -1.2 859,692 - CSW01_04160 0.10 +2.7 859,692 - CSW01_04160 0.10 -0.3 859,692 - CSW01_04160 0.10 +1.3 859,692 - CSW01_04160 0.10 -1.0 859,692 - CSW01_04160 0.10 +0.3
Or see this region's nucleotide sequence