Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03840

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03830 and CSW01_03835 are separated by 152 nucleotidesCSW01_03835 and CSW01_03840 are separated by 229 nucleotidesCSW01_03840 and CSW01_03845 overlap by 46 nucleotidesCSW01_03845 and CSW01_03850 are separated by 10 nucleotides CSW01_03830: CSW01_03830 - isocitrate lyase, at 789,495 to 790,808 _03830 CSW01_03835: CSW01_03835 - acetoin utilization protein AcuB, at 790,961 to 791,470 _03835 CSW01_03840: CSW01_03840 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 791,700 to 792,758 _03840 CSW01_03845: CSW01_03845 - hypothetical protein, at 792,713 to 792,976 _03845 CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126 _03850 Position (kb) 791 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 790.715 kb on + strandat 790.733 kb on + strandat 790.741 kb on - strandat 790.743 kb on + strandat 790.778 kb on - strandat 790.817 kb on + strandat 790.878 kb on - strandat 790.884 kb on + strandat 790.892 kb on - strandat 790.975 kb on - strandat 791.158 kb on + strand, within CSW01_03835at 791.163 kb on + strand, within CSW01_03835at 791.172 kb on + strand, within CSW01_03835at 791.180 kb on - strand, within CSW01_03835at 791.182 kb on + strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.215 kb on - strand, within CSW01_03835at 791.222 kb on - strand, within CSW01_03835at 791.292 kb on + strand, within CSW01_03835at 791.326 kb on + strand, within CSW01_03835at 791.370 kb on - strand, within CSW01_03835at 791.400 kb on + strand, within CSW01_03835at 791.408 kb on - strand, within CSW01_03835at 791.411 kb on + strand, within CSW01_03835at 791.424 kb on - strandat 791.424 kb on - strandat 791.496 kb on - strandat 791.543 kb on + strandat 791.561 kb on + strandat 791.569 kb on - strandat 791.597 kb on + strandat 791.597 kb on - strandat 791.605 kb on - strandat 791.612 kb on + strandat 791.632 kb on + strandat 791.638 kb on + strandat 791.638 kb on + strandat 791.640 kb on - strandat 791.646 kb on - strandat 791.646 kb on - strandat 791.690 kb on + strandat 791.868 kb on + strand, within CSW01_03840at 791.878 kb on + strand, within CSW01_03840at 791.989 kb on + strand, within CSW01_03840at 792.036 kb on + strand, within CSW01_03840at 792.062 kb on - strand, within CSW01_03840at 792.071 kb on - strand, within CSW01_03840at 792.201 kb on + strand, within CSW01_03840at 792.201 kb on - strand, within CSW01_03840at 792.209 kb on - strand, within CSW01_03840at 792.289 kb on - strand, within CSW01_03840at 792.296 kb on - strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.304 kb on + strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.312 kb on - strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.331 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.332 kb on + strand, within CSW01_03840at 792.340 kb on - strand, within CSW01_03840at 792.459 kb on + strand, within CSW01_03840at 792.466 kb on - strand, within CSW01_03840at 792.467 kb on - strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.621 kb on + strand, within CSW01_03840at 792.660 kb on - strandat 792.662 kb on + strandat 792.862 kb on - strand, within CSW01_03845at 792.879 kb on + strand, within CSW01_03845at 792.921 kb on - strand, within CSW01_03845at 792.968 kb on - strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.062 kb on + strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.070 kb on - strandat 793.117 kb on + strand, within CSW01_03850at 793.165 kb on + strand, within CSW01_03850at 793.173 kb on - strand, within CSW01_03850at 793.197 kb on - strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.243 kb on + strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.251 kb on - strand, within CSW01_03850at 793.256 kb on - strand, within CSW01_03850at 793.275 kb on - strand, within CSW01_03850at 793.295 kb on - strand, within CSW01_03850at 793.422 kb on - strand, within CSW01_03850at 793.423 kb on + strand, within CSW01_03850at 793.424 kb on + strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.432 kb on - strand, within CSW01_03850at 793.510 kb on - strand, within CSW01_03850at 793.626 kb on - strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.667 kb on - strand, within CSW01_03850at 793.677 kb on + strand, within CSW01_03850at 793.687 kb on + strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.737 kb on + strand, within CSW01_03850at 793.748 kb on + strand, within CSW01_03850

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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790,715 + +0.5
790,733 + +1.4
790,741 - -0.5
790,743 + -0.5
790,778 - -0.8
790,817 + +0.6
790,878 - -2.5
790,884 + +0.4
790,892 - -2.3
790,975 - -0.8
791,158 + CSW01_03835 0.39 +0.2
791,163 + CSW01_03835 0.40 +0.3
791,172 + CSW01_03835 0.41 -1.3
791,180 - CSW01_03835 0.43 +0.8
791,182 + CSW01_03835 0.43 -0.4
791,215 - CSW01_03835 0.50 +0.6
791,215 - CSW01_03835 0.50 -1.0
791,222 - CSW01_03835 0.51 -2.6
791,292 + CSW01_03835 0.65 +2.5
791,326 + CSW01_03835 0.72 +0.3
791,370 - CSW01_03835 0.80 -2.5
791,400 + CSW01_03835 0.86 -1.7
791,408 - CSW01_03835 0.88 -0.3
791,411 + CSW01_03835 0.88 +1.0
791,424 - -2.5
791,424 - +0.1
791,496 - -0.3
791,543 + +1.2
791,561 + -1.4
791,569 - -2.4
791,597 + +0.6
791,597 - -0.9
791,605 - +0.2
791,612 + -2.0
791,632 + +0.7
791,638 + -3.1
791,638 + +1.6
791,640 - -0.1
791,646 - -0.2
791,646 - +1.1
791,690 + -1.7
791,868 + CSW01_03840 0.16 -2.4
791,878 + CSW01_03840 0.17 +0.1
791,989 + CSW01_03840 0.27 +0.9
792,036 + CSW01_03840 0.32 -1.3
792,062 - CSW01_03840 0.34 -2.0
792,071 - CSW01_03840 0.35 +0.2
792,201 + CSW01_03840 0.47 +1.4
792,201 - CSW01_03840 0.47 +0.6
792,209 - CSW01_03840 0.48 +0.8
792,289 - CSW01_03840 0.56 -2.2
792,296 - CSW01_03840 0.56 +0.4
792,304 + CSW01_03840 0.57 +0.3
792,304 + CSW01_03840 0.57 +0.3
792,304 + CSW01_03840 0.57 -0.7
792,312 - CSW01_03840 0.58 +0.1
792,312 - CSW01_03840 0.58 +0.4
792,312 - CSW01_03840 0.58 -0.2
792,312 - CSW01_03840 0.58 -0.3
792,331 + CSW01_03840 0.60 -0.4
792,331 + CSW01_03840 0.60 -3.5
792,332 + CSW01_03840 0.60 +0.0
792,332 + CSW01_03840 0.60 +1.4
792,340 - CSW01_03840 0.60 -1.4
792,459 + CSW01_03840 0.72 -2.3
792,466 - CSW01_03840 0.72 -2.0
792,467 - CSW01_03840 0.72 -0.2
792,621 + CSW01_03840 0.87 +0.2
792,621 + CSW01_03840 0.87 -0.4
792,660 - +0.4
792,662 + -0.2
792,862 - CSW01_03845 0.56 +0.1
792,879 + CSW01_03845 0.63 +2.7
792,921 - CSW01_03845 0.79 -3.2
792,968 - -0.2
793,062 + -2.5
793,062 + -2.1
793,062 + -1.2
793,062 + +0.9
793,062 + +1.0
793,062 + -2.1
793,070 - +0.6
793,070 - -3.5
793,070 - -2.6
793,070 - -2.2
793,070 - -2.5
793,070 - +0.7
793,117 + CSW01_03850 0.11 +1.1
793,165 + CSW01_03850 0.16 +1.0
793,173 - CSW01_03850 0.16 +2.3
793,197 - CSW01_03850 0.18 -1.7
793,243 + CSW01_03850 0.22 -0.8
793,243 + CSW01_03850 0.22 -1.0
793,243 + CSW01_03850 0.22 -0.2
793,243 + CSW01_03850 0.22 -1.8
793,243 + CSW01_03850 0.22 +0.6
793,251 - CSW01_03850 0.23 -1.4
793,251 - CSW01_03850 0.23 +1.1
793,251 - CSW01_03850 0.23 -1.0
793,251 - CSW01_03850 0.23 -2.0
793,251 - CSW01_03850 0.23 -1.9
793,251 - CSW01_03850 0.23 +1.4
793,251 - CSW01_03850 0.23 +0.6
793,251 - CSW01_03850 0.23 -2.2
793,251 - CSW01_03850 0.23 +1.6
793,256 - CSW01_03850 0.24 +0.9
793,275 - CSW01_03850 0.25 +0.2
793,295 - CSW01_03850 0.27 -1.4
793,422 - CSW01_03850 0.38 +0.7
793,423 + CSW01_03850 0.38 -2.8
793,424 + CSW01_03850 0.38 -2.8
793,432 - CSW01_03850 0.39 -0.6
793,432 - CSW01_03850 0.39 -2.5
793,510 - CSW01_03850 0.46 +0.3
793,626 - CSW01_03850 0.56 -1.6
793,633 + CSW01_03850 0.57 -1.6
793,633 + CSW01_03850 0.57 +0.7
793,641 - CSW01_03850 0.57 +0.6
793,641 - CSW01_03850 0.57 +1.1
793,641 - CSW01_03850 0.57 -2.1
793,667 - CSW01_03850 0.60 -1.7
793,677 + CSW01_03850 0.61 -0.6
793,687 + CSW01_03850 0.61 +0.5
793,695 - CSW01_03850 0.62 +0.7
793,695 - CSW01_03850 0.62 -2.7
793,695 - CSW01_03850 0.62 -2.0
793,737 + CSW01_03850 0.66 +1.8
793,748 + CSW01_03850 0.67 -0.3

Or see this region's nucleotide sequence