Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03765

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03755 and CSW01_03760 are separated by 236 nucleotidesCSW01_03760 and CSW01_03765 are separated by 21 nucleotidesCSW01_03765 and CSW01_03770 overlap by 4 nucleotides CSW01_03755: CSW01_03755 - recombination-associated protein RdgC, at 769,862 to 770,776 _03755 CSW01_03760: CSW01_03760 - phosphate regulon transcriptional regulatory protein PhoB, at 771,013 to 771,702 _03760 CSW01_03765: CSW01_03765 - two-component system sensor histidine kinase PhoR, at 771,724 to 773,025 _03765 CSW01_03770: CSW01_03770 - phosphate ABC transporter substrate-binding protein, at 773,022 to 773,999 _03770 Position (kb) 771 772 773 774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 770.729 kb on - strandat 770.760 kb on - strandat 770.893 kb on - strandat 770.901 kb on - strandat 770.945 kb on + strandat 770.945 kb on + strandat 770.945 kb on + strandat 771.054 kb on - strandat 771.061 kb on + strandat 771.234 kb on - strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.322 kb on + strand, within CSW01_03760at 771.364 kb on - strand, within CSW01_03760at 771.391 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.525 kb on - strand, within CSW01_03760at 771.537 kb on - strand, within CSW01_03760at 771.557 kb on - strand, within CSW01_03760at 771.626 kb on + strand, within CSW01_03760at 771.676 kb on + strandat 771.679 kb on - strandat 771.684 kb on - strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.707 kb on + strandat 771.715 kb on - strandat 771.755 kb on + strandat 771.811 kb on + strandat 771.825 kb on + strandat 772.007 kb on + strand, within CSW01_03765at 772.049 kb on - strand, within CSW01_03765at 772.097 kb on - strand, within CSW01_03765at 772.136 kb on + strand, within CSW01_03765at 772.146 kb on + strand, within CSW01_03765at 772.269 kb on + strand, within CSW01_03765at 772.275 kb on + strand, within CSW01_03765at 772.282 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.291 kb on - strand, within CSW01_03765at 772.317 kb on + strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.372 kb on - strand, within CSW01_03765at 772.421 kb on + strand, within CSW01_03765at 772.446 kb on - strand, within CSW01_03765at 772.529 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.612 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.735 kb on - strand, within CSW01_03765at 772.764 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.836 kb on + strand, within CSW01_03765at 772.836 kb on - strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.872 kb on - strand, within CSW01_03765at 773.056 kb on + strandat 773.138 kb on - strand, within CSW01_03770at 773.184 kb on - strand, within CSW01_03770at 773.212 kb on + strand, within CSW01_03770at 773.215 kb on - strand, within CSW01_03770at 773.232 kb on + strand, within CSW01_03770at 773.240 kb on - strand, within CSW01_03770at 773.287 kb on + strand, within CSW01_03770at 773.340 kb on - strand, within CSW01_03770at 773.365 kb on - strand, within CSW01_03770at 773.464 kb on + strand, within CSW01_03770at 773.471 kb on - strand, within CSW01_03770at 773.473 kb on + strand, within CSW01_03770at 773.516 kb on + strand, within CSW01_03770at 773.525 kb on - strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.611 kb on - strand, within CSW01_03770at 773.695 kb on + strand, within CSW01_03770at 773.707 kb on + strand, within CSW01_03770at 773.761 kb on + strand, within CSW01_03770at 773.797 kb on - strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.823 kb on - strand, within CSW01_03770at 773.909 kb on - strandat 773.914 kb on - strandat 773.963 kb on - strandat 774.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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770,729 - -3.8
770,760 - +1.6
770,893 - -2.6
770,901 - -3.2
770,945 + -4.0
770,945 + -2.1
770,945 + -1.2
771,054 - +0.2
771,061 + -1.2
771,234 - CSW01_03760 0.32 +1.4
771,293 + CSW01_03760 0.41 -3.1
771,293 + CSW01_03760 0.41 +0.9
771,293 + CSW01_03760 0.41 -0.9
771,293 + CSW01_03760 0.41 -1.9
771,301 - CSW01_03760 0.42 -0.7
771,301 - CSW01_03760 0.42 +0.4
771,301 - CSW01_03760 0.42 +0.1
771,301 - CSW01_03760 0.42 +0.6
771,301 - CSW01_03760 0.42 +1.0
771,301 - CSW01_03760 0.42 +1.0
771,301 - CSW01_03760 0.42 +2.0
771,301 - CSW01_03760 0.42 +0.1
771,301 - CSW01_03760 0.42 +0.1
771,322 + CSW01_03760 0.45 -2.0
771,364 - CSW01_03760 0.51 +1.1
771,391 + CSW01_03760 0.55 -3.2
771,517 + CSW01_03760 0.73 +0.6
771,517 + CSW01_03760 0.73 +0.2
771,525 - CSW01_03760 0.74 +0.5
771,537 - CSW01_03760 0.76 +0.8
771,557 - CSW01_03760 0.79 -2.6
771,626 + CSW01_03760 0.89 +2.4
771,676 + -3.0
771,679 - +0.7
771,684 - -1.4
771,697 + +0.4
771,697 + +0.8
771,697 + -0.5
771,697 + -2.4
771,697 + +0.1
771,705 - +0.9
771,705 - +0.6
771,705 - +0.5
771,705 - -1.2
771,705 - +1.0
771,705 - +0.4
771,705 - -2.2
771,705 - +0.8
771,705 - +1.1
771,707 + -1.0
771,715 - -0.5
771,755 + -3.6
771,811 + -1.8
771,825 + +1.4
772,007 + CSW01_03765 0.22 +0.3
772,049 - CSW01_03765 0.25 +1.8
772,097 - CSW01_03765 0.29 -3.3
772,136 + CSW01_03765 0.32 -4.2
772,146 + CSW01_03765 0.32 +1.6
772,269 + CSW01_03765 0.42 +0.3
772,275 + CSW01_03765 0.42 +0.5
772,282 + CSW01_03765 0.43 -2.2
772,290 + CSW01_03765 0.43 +1.0
772,290 + CSW01_03765 0.43 -0.8
772,290 + CSW01_03765 0.43 +0.4
772,291 - CSW01_03765 0.44 +1.5
772,317 + CSW01_03765 0.46 +1.0
772,334 - CSW01_03765 0.47 -0.2
772,334 - CSW01_03765 0.47 -0.1
772,334 - CSW01_03765 0.47 -2.4
772,372 - CSW01_03765 0.50 +0.3
772,421 + CSW01_03765 0.54 +0.5
772,446 - CSW01_03765 0.55 +0.8
772,529 - CSW01_03765 0.62 +0.5
772,553 - CSW01_03765 0.64 +1.4
772,553 - CSW01_03765 0.64 +1.5
772,553 - CSW01_03765 0.64 -0.9
772,553 - CSW01_03765 0.64 -2.3
772,612 - CSW01_03765 0.68 +1.3
772,666 - CSW01_03765 0.72 -1.2
772,666 - CSW01_03765 0.72 -2.2
772,735 - CSW01_03765 0.78 -0.1
772,764 + CSW01_03765 0.80 +0.6
772,828 + CSW01_03765 0.85 +0.1
772,828 + CSW01_03765 0.85 +0.8
772,836 + CSW01_03765 0.85 +1.3
772,836 - CSW01_03765 0.85 -2.0
772,838 + CSW01_03765 0.86 +1.1
772,838 + CSW01_03765 0.86 -1.3
772,872 - CSW01_03765 0.88 +0.6
773,056 + -0.7
773,138 - CSW01_03770 0.12 +1.1
773,184 - CSW01_03770 0.17 -0.4
773,212 + CSW01_03770 0.19 -2.0
773,215 - CSW01_03770 0.20 +0.4
773,232 + CSW01_03770 0.21 -0.3
773,240 - CSW01_03770 0.22 +1.4
773,287 + CSW01_03770 0.27 -2.6
773,340 - CSW01_03770 0.33 +0.5
773,365 - CSW01_03770 0.35 +0.8
773,464 + CSW01_03770 0.45 -1.0
773,471 - CSW01_03770 0.46 -0.4
773,473 + CSW01_03770 0.46 +1.3
773,516 + CSW01_03770 0.51 -0.3
773,525 - CSW01_03770 0.51 -0.4
773,603 + CSW01_03770 0.59 +0.7
773,603 + CSW01_03770 0.59 +2.5
773,603 + CSW01_03770 0.59 -3.8
773,611 - CSW01_03770 0.60 +0.5
773,695 + CSW01_03770 0.69 -1.9
773,707 + CSW01_03770 0.70 +1.2
773,761 + CSW01_03770 0.76 -3.0
773,797 - CSW01_03770 0.79 -0.0
773,815 + CSW01_03770 0.81 +1.2
773,815 + CSW01_03770 0.81 +0.7
773,823 - CSW01_03770 0.82 +0.4
773,909 - -2.4
773,914 - +0.7
773,963 - +0.4
774,021 + +0.7

Or see this region's nucleotide sequence