Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03085 and CSW01_03090 are separated by 69 nucleotides CSW01_03090 and CSW01_03095 overlap by 28 nucleotides CSW01_03095 and CSW01_03100 are separated by 55 nucleotides
CSW01_03085: CSW01_03085 - penicillin-binding protein activator, at 608,352 to 610,157
_03085
CSW01_03090: CSW01_03090 - rRNA (cytidine-2'-O-)-methyltransferase, at 610,227 to 611,093
_03090
CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251
_03095
CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918
_03100
Position (kb) 610
611
612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 610.243 kb on - strand at 610.303 kb on + strand at 610.326 kb on + strand, within CSW01_03090 at 610.334 kb on - strand, within CSW01_03090 at 610.334 kb on - strand, within CSW01_03090 at 610.434 kb on - strand, within CSW01_03090 at 610.446 kb on + strand, within CSW01_03090 at 610.446 kb on + strand, within CSW01_03090 at 610.447 kb on - strand, within CSW01_03090 at 610.476 kb on + strand, within CSW01_03090 at 610.482 kb on - strand, within CSW01_03090 at 610.488 kb on + strand, within CSW01_03090 at 610.502 kb on - strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.512 kb on + strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.520 kb on - strand, within CSW01_03090 at 610.601 kb on + strand, within CSW01_03090 at 610.611 kb on - strand, within CSW01_03090 at 610.616 kb on - strand, within CSW01_03090 at 610.624 kb on - strand, within CSW01_03090 at 610.700 kb on - strand, within CSW01_03090 at 610.743 kb on + strand, within CSW01_03090 at 610.818 kb on - strand, within CSW01_03090 at 610.828 kb on - strand, within CSW01_03090 at 610.839 kb on + strand, within CSW01_03090 at 610.892 kb on - strand, within CSW01_03090 at 611.021 kb on - strand at 611.124 kb on + strand, within CSW01_03095 at 611.163 kb on + strand, within CSW01_03095 at 611.173 kb on - strand, within CSW01_03095 at 611.206 kb on + strand, within CSW01_03095 at 611.280 kb on + strand at 611.287 kb on + strand at 611.292 kb on + strand at 611.295 kb on - strand at 611.337 kb on - strand at 611.352 kb on + strand at 611.352 kb on + strand at 611.352 kb on + strand at 611.352 kb on + strand at 611.352 kb on + strand at 611.360 kb on - strand at 611.360 kb on - strand at 611.360 kb on - strand at 611.360 kb on - strand at 611.360 kb on - strand at 611.360 kb on - strand at 611.390 kb on - strand, within CSW01_03100 at 611.401 kb on + strand, within CSW01_03100 at 611.417 kb on + strand, within CSW01_03100 at 611.561 kb on - strand, within CSW01_03100 at 611.580 kb on - strand, within CSW01_03100 at 611.587 kb on - strand, within CSW01_03100 at 611.685 kb on + strand, within CSW01_03100 at 611.692 kb on - strand, within CSW01_03100 at 611.732 kb on + strand, within CSW01_03100 at 611.751 kb on + strand, within CSW01_03100 at 611.922 kb on + strand at 611.930 kb on - strand at 611.930 kb on - strand at 611.930 kb on - strand at 611.930 kb on - strand at 612.012 kb on - strand at 612.012 kb on - strand at 612.085 kb on + strand at 612.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 610,243 - +0.8 610,303 + +1.8 610,326 + CSW01_03090 0.11 +0.1 610,334 - CSW01_03090 0.12 +2.1 610,334 - CSW01_03090 0.12 -0.1 610,434 - CSW01_03090 0.24 -3.9 610,446 + CSW01_03090 0.25 -0.1 610,446 + CSW01_03090 0.25 -1.1 610,447 - CSW01_03090 0.25 +0.5 610,476 + CSW01_03090 0.29 +1.1 610,482 - CSW01_03090 0.29 +0.2 610,488 + CSW01_03090 0.30 +0.6 610,502 - CSW01_03090 0.32 +0.6 610,512 + CSW01_03090 0.33 +0.5 610,512 + CSW01_03090 0.33 -0.5 610,512 + CSW01_03090 0.33 -0.7 610,512 + CSW01_03090 0.33 -1.0 610,512 + CSW01_03090 0.33 +1.2 610,520 - CSW01_03090 0.34 -0.5 610,520 - CSW01_03090 0.34 +1.2 610,520 - CSW01_03090 0.34 +1.0 610,601 + CSW01_03090 0.43 -1.5 610,611 - CSW01_03090 0.44 +0.1 610,616 - CSW01_03090 0.45 +0.3 610,624 - CSW01_03090 0.46 +1.2 610,700 - CSW01_03090 0.55 +0.6 610,743 + CSW01_03090 0.60 +0.1 610,818 - CSW01_03090 0.68 +1.1 610,828 - CSW01_03090 0.69 +0.3 610,839 + CSW01_03090 0.71 -3.5 610,892 - CSW01_03090 0.77 +1.2 611,021 - -1.9 611,124 + CSW01_03095 0.31 +1.7 611,163 + CSW01_03095 0.52 +1.0 611,173 - CSW01_03095 0.58 +0.4 611,206 + CSW01_03095 0.75 +1.2 611,280 + -2.0 611,287 + +0.1 611,292 + +1.6 611,295 - -4.1 611,337 - -0.5 611,352 + +0.6 611,352 + +0.1 611,352 + +0.9 611,352 + +1.1 611,352 + +2.0 611,360 - +0.2 611,360 - -0.3 611,360 - +1.1 611,360 - +1.8 611,360 - +2.6 611,360 - +0.9 611,390 - CSW01_03100 0.14 -1.1 611,401 + CSW01_03100 0.15 -0.9 611,417 + CSW01_03100 0.18 +1.1 611,561 - CSW01_03100 0.42 +0.2 611,580 - CSW01_03100 0.45 +1.1 611,587 - CSW01_03100 0.46 +0.1 611,685 + CSW01_03100 0.62 +2.1 611,692 - CSW01_03100 0.63 +1.3 611,732 + CSW01_03100 0.69 +0.1 611,751 + CSW01_03100 0.73 +0.4 611,922 + +0.1 611,930 - -2.0 611,930 - +0.8 611,930 - +0.6 611,930 - +0.3 612,012 - +0.5 612,012 - -1.8 612,085 + +1.7 612,085 + -0.2
Or see this region's nucleotide sequence