Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02925

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02895 and CSW01_02900 are separated by 181 nucleotidesCSW01_02900 and CSW01_02905 are separated by 33 nucleotidesCSW01_02905 and CSW01_02910 are separated by 22 nucleotidesCSW01_02910 and CSW01_02915 are separated by 66 nucleotidesCSW01_02915 and CSW01_02920 are separated by 55 nucleotidesCSW01_02920 and CSW01_02925 are separated by 72 nucleotidesCSW01_02925 and CSW01_02930 are separated by 56 nucleotidesCSW01_02930 and CSW01_02935 are separated by 71 nucleotidesCSW01_02935 and CSW01_02940 are separated by 366 nucleotidesCSW01_02940 and CSW01_02945 are separated by 28 nucleotides CSW01_02895: CSW01_02895 - carbon storage regulator, at 579,330 to 579,527 _02895 CSW01_02900: CSW01_02900 - tRNA-Ser, at 579,709 to 579,801 _02900 CSW01_02905: CSW01_02905 - tRNA-Arg, at 579,835 to 579,911 _02905 CSW01_02910: CSW01_02910 - tRNA-Ser, at 579,934 to 580,026 _02910 CSW01_02915: CSW01_02915 - tRNA-Arg, at 580,093 to 580,169 _02915 CSW01_02920: CSW01_02920 - tRNA-Arg, at 580,225 to 580,301 _02920 CSW01_02925: CSW01_02925 - tRNA-Arg, at 580,374 to 580,450 _02925 CSW01_02930: CSW01_02930 - tRNA-Arg, at 580,507 to 580,583 _02930 CSW01_02935: CSW01_02935 - tRNA-Arg, at 580,655 to 580,731 _02935 CSW01_02940: CSW01_02940 - oxaloacetate decarboxylase subunit gamma, at 581,098 to 581,358 _02940 CSW01_02945: CSW01_02945 - oxaloacetate decarboxylase subunit alpha, at 581,387 to 583,180 _02945 Position (kb) 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1at 579.503 kb on - strand, within CSW01_02895at 580.311 kb on + strandat 580.324 kb on + strandat 580.324 kb on + strandat 580.606 kb on + strandat 580.614 kb on - strandat 580.791 kb on - strandat 580.978 kb on - strandat 581.199 kb on + strand, within CSW01_02940at 581.266 kb on - strand, within CSW01_02940at 581.285 kb on + strand, within CSW01_02940at 581.326 kb on + strand, within CSW01_02940at 581.331 kb on + strand, within CSW01_02940at 581.339 kb on - strandat 581.389 kb on - strandat 581.389 kb on - strandat 581.394 kb on + strandat 581.402 kb on - strandat 581.403 kb on - strandat 581.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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579,503 - CSW01_02895 0.87 -1.0
580,311 + -1.8
580,324 + -1.1
580,324 + -1.0
580,606 + +0.2
580,614 - +0.5
580,791 - +1.0
580,978 - +1.2
581,199 + CSW01_02940 0.39 -3.5
581,266 - CSW01_02940 0.64 +0.5
581,285 + CSW01_02940 0.72 +0.9
581,326 + CSW01_02940 0.87 +0.2
581,331 + CSW01_02940 0.89 +0.6
581,339 - -0.0
581,389 - -0.1
581,389 - +0.6
581,394 + +0.2
581,402 - +0.7
581,403 - +0.3
581,416 - -2.8

Or see this region's nucleotide sequence