Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02790 and CSW01_02795 overlap by 4 nucleotides CSW01_02795 and CSW01_02800 are separated by 108 nucleotides CSW01_02800 and CSW01_02805 overlap by 4 nucleotides CSW01_02805 and CSW01_02810 overlap by 4 nucleotides
CSW01_02790: CSW01_02790 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 557,103 to 557,609
_02790
CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409
_02795
CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808
_02800
CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503
_02805
CSW01_02810: CSW01_02810 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 559,500 to 559,976
_02810
Position (kb) 558
559 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 557.546 kb on + strand, within CSW01_02790 at 557.563 kb on + strand at 557.563 kb on + strand at 557.563 kb on + strand at 557.563 kb on + strand at 557.571 kb on - strand at 557.571 kb on - strand at 557.571 kb on - strand at 557.571 kb on - strand at 557.571 kb on - strand at 557.571 kb on - strand at 557.639 kb on + strand at 557.645 kb on + strand at 557.710 kb on - strand, within CSW01_02795 at 557.717 kb on + strand, within CSW01_02795 at 557.717 kb on + strand, within CSW01_02795 at 557.717 kb on + strand, within CSW01_02795 at 557.725 kb on - strand, within CSW01_02795 at 557.771 kb on + strand, within CSW01_02795 at 557.878 kb on + strand, within CSW01_02795 at 557.924 kb on + strand, within CSW01_02795 at 557.943 kb on + strand, within CSW01_02795 at 557.943 kb on + strand, within CSW01_02795 at 557.951 kb on - strand, within CSW01_02795 at 557.951 kb on - strand, within CSW01_02795 at 557.951 kb on - strand, within CSW01_02795 at 557.972 kb on - strand, within CSW01_02795 at 557.987 kb on - strand, within CSW01_02795 at 558.005 kb on - strand, within CSW01_02795 at 558.013 kb on + strand, within CSW01_02795 at 558.021 kb on - strand, within CSW01_02795 at 558.021 kb on - strand, within CSW01_02795 at 558.021 kb on - strand, within CSW01_02795 at 558.120 kb on + strand, within CSW01_02795 at 558.132 kb on + strand, within CSW01_02795 at 558.140 kb on - strand, within CSW01_02795 at 558.140 kb on - strand, within CSW01_02795 at 558.145 kb on - strand, within CSW01_02795 at 558.224 kb on + strand, within CSW01_02795 at 558.224 kb on - strand, within CSW01_02795 at 558.242 kb on + strand, within CSW01_02795 at 558.242 kb on + strand, within CSW01_02795 at 558.242 kb on + strand, within CSW01_02795 at 558.242 kb on + strand, within CSW01_02795 at 558.250 kb on - strand, within CSW01_02795 at 558.250 kb on - strand, within CSW01_02795 at 558.269 kb on + strand, within CSW01_02795 at 558.293 kb on + strand, within CSW01_02795 at 558.383 kb on - strand at 558.383 kb on - strand at 558.506 kb on - strand at 558.515 kb on + strand at 558.789 kb on + strand at 558.802 kb on + strand at 558.807 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 557,546 + CSW01_02790 0.87 +1.1 557,563 + +0.8 557,563 + -2.5 557,563 + +1.2 557,563 + +0.4 557,571 - +2.2 557,571 - +2.0 557,571 - +1.3 557,571 - +0.7 557,571 - -3.9 557,571 - -1.3 557,639 + -0.3 557,645 + -0.2 557,710 - CSW01_02795 0.13 +0.6 557,717 + CSW01_02795 0.14 -1.2 557,717 + CSW01_02795 0.14 +0.5 557,717 + CSW01_02795 0.14 -2.0 557,725 - CSW01_02795 0.15 -1.6 557,771 + CSW01_02795 0.21 -1.2 557,878 + CSW01_02795 0.34 -0.0 557,924 + CSW01_02795 0.40 -2.1 557,943 + CSW01_02795 0.42 +0.9 557,943 + CSW01_02795 0.42 -1.8 557,951 - CSW01_02795 0.43 -2.8 557,951 - CSW01_02795 0.43 +0.6 557,951 - CSW01_02795 0.43 +0.8 557,972 - CSW01_02795 0.46 -1.3 557,987 - CSW01_02795 0.47 -2.5 558,005 - CSW01_02795 0.50 +1.0 558,013 + CSW01_02795 0.51 -0.1 558,021 - CSW01_02795 0.52 +1.1 558,021 - CSW01_02795 0.52 -3.1 558,021 - CSW01_02795 0.52 +0.2 558,120 + CSW01_02795 0.64 -0.5 558,132 + CSW01_02795 0.65 +2.2 558,140 - CSW01_02795 0.66 +0.4 558,140 - CSW01_02795 0.66 +0.5 558,145 - CSW01_02795 0.67 -4.1 558,224 + CSW01_02795 0.77 +1.0 558,224 - CSW01_02795 0.77 -3.0 558,242 + CSW01_02795 0.79 -0.6 558,242 + CSW01_02795 0.79 -2.1 558,242 + CSW01_02795 0.79 +0.4 558,242 + CSW01_02795 0.79 -3.8 558,250 - CSW01_02795 0.80 +0.4 558,250 - CSW01_02795 0.80 -0.7 558,269 + CSW01_02795 0.82 +1.8 558,293 + CSW01_02795 0.85 -4.8 558,383 - -0.4 558,383 - +3.3 558,506 - -2.8 558,515 + +1.3 558,789 + +0.1 558,802 + -2.1 558,807 + +0.5
Or see this region's nucleotide sequence