Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02465

Experiment: ICP1_phage_0.23_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02460 and CSW01_02465 are separated by 14 nucleotidesCSW01_02465 and CSW01_02470 are separated by 111 nucleotidesCSW01_02470 and CSW01_02475 are separated by 84 nucleotides CSW01_02460: CSW01_02460 - type IV pili twitching motility protein PilT, at 490,036 to 491,073 _02460 CSW01_02465: CSW01_02465 - twitching motility protein PilT, at 491,088 to 492,194 _02465 CSW01_02470: CSW01_02470 - LuxR family transcriptional regulator, at 492,306 to 493,109 _02470 CSW01_02475: CSW01_02475 - tyrosine--tRNA ligase, at 493,194 to 494,498 _02475 Position (kb) 491 492 493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 490.135 kb on + strandat 490.135 kb on + strandat 490.179 kb on - strand, within CSW01_02460at 490.210 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.220 kb on - strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.320 kb on + strand, within CSW01_02460at 490.367 kb on + strand, within CSW01_02460at 490.443 kb on + strand, within CSW01_02460at 490.491 kb on - strand, within CSW01_02460at 490.621 kb on + strand, within CSW01_02460at 490.672 kb on - strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.735 kb on - strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.958 kb on + strand, within CSW01_02460at 491.040 kb on + strandat 491.077 kb on + strandat 491.085 kb on - strandat 491.122 kb on + strandat 491.136 kb on + strandat 491.136 kb on + strandat 491.136 kb on + strandat 491.141 kb on + strandat 491.144 kb on - strandat 491.144 kb on - strandat 491.149 kb on - strandat 491.189 kb on - strandat 491.237 kb on - strand, within CSW01_02465at 491.237 kb on - strand, within CSW01_02465at 491.237 kb on - strand, within CSW01_02465at 491.249 kb on + strand, within CSW01_02465at 491.254 kb on + strand, within CSW01_02465at 491.257 kb on - strand, within CSW01_02465at 491.298 kb on + strand, within CSW01_02465at 491.304 kb on - strand, within CSW01_02465at 491.328 kb on - strand, within CSW01_02465at 491.367 kb on - strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.452 kb on + strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.619 kb on - strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.858 kb on + strand, within CSW01_02465at 491.866 kb on - strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.933 kb on + strand, within CSW01_02465at 491.936 kb on - strand, within CSW01_02465at 492.019 kb on - strand, within CSW01_02465at 492.039 kb on + strand, within CSW01_02465at 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.087 kb on - strandat 492.089 kb on + strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.094 kb on + strandat 492.097 kb on - strandat 492.102 kb on - strandat 492.125 kb on + strandat 492.133 kb on - strandat 492.236 kb on - strandat 492.261 kb on + strandat 492.266 kb on + strandat 492.399 kb on + strand, within CSW01_02470at 492.399 kb on + strand, within CSW01_02470at 492.407 kb on - strand, within CSW01_02470at 492.417 kb on - strand, within CSW01_02470at 492.519 kb on - strand, within CSW01_02470at 492.556 kb on - strand, within CSW01_02470at 492.579 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.796 kb on - strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.856 kb on + strand, within CSW01_02470at 492.869 kb on + strand, within CSW01_02470at 492.874 kb on + strand, within CSW01_02470at 492.908 kb on + strand, within CSW01_02470at 492.910 kb on + strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.934 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 493.001 kb on - strand, within CSW01_02470at 493.018 kb on - strand, within CSW01_02470at 493.035 kb on - strandat 493.038 kb on - strandat 493.111 kb on - strandat 493.150 kb on - strandat 493.173 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
remove
490,135 + -3.2
490,135 + -0.9
490,179 - CSW01_02460 0.14 -1.2
490,210 - CSW01_02460 0.17 -2.8
490,215 - CSW01_02460 0.17 -0.1
490,215 - CSW01_02460 0.17 -0.3
490,220 - CSW01_02460 0.18 -2.9
490,260 + CSW01_02460 0.22 -0.1
490,260 + CSW01_02460 0.22 +0.6
490,260 + CSW01_02460 0.22 +0.6
490,260 + CSW01_02460 0.22 -0.8
490,260 + CSW01_02460 0.22 -2.1
490,260 + CSW01_02460 0.22 -0.6
490,268 - CSW01_02460 0.22 +0.1
490,268 - CSW01_02460 0.22 -1.0
490,268 - CSW01_02460 0.22 -1.8
490,268 - CSW01_02460 0.22 -0.2
490,320 + CSW01_02460 0.27 -2.2
490,367 + CSW01_02460 0.32 +0.2
490,443 + CSW01_02460 0.39 -2.7
490,491 - CSW01_02460 0.44 +0.1
490,621 + CSW01_02460 0.56 -2.0
490,672 - CSW01_02460 0.61 -2.1
490,717 + CSW01_02460 0.66 -0.4
490,717 + CSW01_02460 0.66 +0.1
490,717 + CSW01_02460 0.66 -1.6
490,725 - CSW01_02460 0.66 +0.9
490,725 - CSW01_02460 0.66 -0.9
490,735 - CSW01_02460 0.67 -1.8
490,930 + CSW01_02460 0.86 -1.7
490,930 + CSW01_02460 0.86 -2.7
490,958 + CSW01_02460 0.89 +0.2
491,040 + -0.2
491,077 + -2.5
491,085 - +0.9
491,122 + -0.9
491,136 + +0.9
491,136 + -2.2
491,136 + -1.3
491,141 + -0.5
491,144 - -1.2
491,144 - +1.3
491,149 - -0.2
491,189 - +1.0
491,237 - CSW01_02465 0.13 +1.1
491,237 - CSW01_02465 0.13 +0.5
491,237 - CSW01_02465 0.13 +0.4
491,249 + CSW01_02465 0.15 -0.6
491,254 + CSW01_02465 0.15 -0.7
491,257 - CSW01_02465 0.15 +0.5
491,298 + CSW01_02465 0.19 -1.4
491,304 - CSW01_02465 0.20 +0.8
491,328 - CSW01_02465 0.22 +0.2
491,367 - CSW01_02465 0.25 +0.6
491,395 + CSW01_02465 0.28 +0.8
491,395 + CSW01_02465 0.28 +0.6
491,395 + CSW01_02465 0.28 +2.2
491,403 - CSW01_02465 0.28 +0.1
491,403 - CSW01_02465 0.28 +0.7
491,452 + CSW01_02465 0.33 -0.9
491,526 - CSW01_02465 0.40 -0.3
491,526 - CSW01_02465 0.40 +0.9
491,619 - CSW01_02465 0.48 -2.1
491,750 + CSW01_02465 0.60 -0.0
491,750 + CSW01_02465 0.60 +1.4
491,858 + CSW01_02465 0.70 -1.3
491,866 - CSW01_02465 0.70 +0.5
491,907 + CSW01_02465 0.74 +0.4
491,907 + CSW01_02465 0.74 -2.4
491,907 + CSW01_02465 0.74 -3.3
491,933 + CSW01_02465 0.76 +0.2
491,936 - CSW01_02465 0.77 +1.2
492,019 - CSW01_02465 0.84 +0.1
492,039 + CSW01_02465 0.86 +0.6
492,084 + -1.9
492,084 + +1.4
492,084 + -3.6
492,084 + -0.6
492,084 + +0.1
492,084 + -2.1
492,084 + +0.1
492,084 + +1.8
492,087 - +1.6
492,089 + -1.5
492,092 - +0.2
492,092 - +1.3
492,092 - -0.4
492,092 - +0.1
492,092 - +0.5
492,094 + +0.6
492,097 - -2.1
492,102 - -0.1
492,125 + -3.9
492,133 - -2.9
492,236 - -0.3
492,261 + -0.5
492,266 + +1.4
492,399 + CSW01_02470 0.12 +2.0
492,399 + CSW01_02470 0.12 +0.3
492,407 - CSW01_02470 0.13 -0.4
492,417 - CSW01_02470 0.14 -4.0
492,519 - CSW01_02470 0.26 +0.1
492,556 - CSW01_02470 0.31 -1.4
492,579 + CSW01_02470 0.34 -0.1
492,727 + CSW01_02470 0.52 -2.4
492,727 + CSW01_02470 0.52 -1.2
492,727 + CSW01_02470 0.52 +0.0
492,727 + CSW01_02470 0.52 -3.4
492,727 + CSW01_02470 0.52 -4.0
492,727 + CSW01_02470 0.52 -2.2
492,727 + CSW01_02470 0.52 -1.4
492,735 - CSW01_02470 0.53 -0.1
492,735 - CSW01_02470 0.53 -4.6
492,735 - CSW01_02470 0.53 +0.9
492,735 - CSW01_02470 0.53 +0.5
492,735 - CSW01_02470 0.53 -1.5
492,758 + CSW01_02470 0.56 -1.5
492,758 + CSW01_02470 0.56 -0.4
492,758 + CSW01_02470 0.56 -2.8
492,796 - CSW01_02470 0.61 +0.9
492,855 + CSW01_02470 0.68 -0.4
492,855 + CSW01_02470 0.68 -2.9
492,856 + CSW01_02470 0.68 +0.3
492,869 + CSW01_02470 0.70 -1.7
492,874 + CSW01_02470 0.71 -1.8
492,908 + CSW01_02470 0.75 +0.3
492,910 + CSW01_02470 0.75 -3.5
492,916 - CSW01_02470 0.76 -0.2
492,916 - CSW01_02470 0.76 -1.7
492,918 - CSW01_02470 0.76 +0.3
492,918 - CSW01_02470 0.76 +0.7
492,934 + CSW01_02470 0.78 -3.7
492,954 + CSW01_02470 0.81 +1.2
492,954 + CSW01_02470 0.81 -2.3
493,001 - CSW01_02470 0.86 -3.2
493,018 - CSW01_02470 0.89 -2.1
493,035 - +0.6
493,038 - +1.3
493,111 - -2.0
493,150 - +0.6
493,173 + +0.1

Or see this region's nucleotide sequence