Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02460

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02450 and CSW01_02455 are separated by 52 nucleotidesCSW01_02455 and CSW01_02460 are separated by 25 nucleotidesCSW01_02460 and CSW01_02465 are separated by 14 nucleotides CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247 _02450 CSW01_02455: CSW01_02455 - YggS family pyridoxal phosphate enzyme, at 489,300 to 490,010 _02455 CSW01_02460: CSW01_02460 - type IV pili twitching motility protein PilT, at 490,036 to 491,073 _02460 CSW01_02465: CSW01_02465 - twitching motility protein PilT, at 491,088 to 492,194 _02465 Position (kb) 490 491 492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 489.076 kb on + strand, within CSW01_02450at 489.244 kb on - strandat 489.348 kb on - strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.353 kb on + strandat 489.361 kb on - strandat 489.361 kb on - strandat 489.420 kb on - strand, within CSW01_02455at 489.482 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.487 kb on + strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.495 kb on - strand, within CSW01_02455at 489.536 kb on + strand, within CSW01_02455at 489.544 kb on - strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.616 kb on + strand, within CSW01_02455at 489.660 kb on + strand, within CSW01_02455at 489.695 kb on + strand, within CSW01_02455at 489.752 kb on + strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.782 kb on - strand, within CSW01_02455at 489.821 kb on - strand, within CSW01_02455at 489.826 kb on + strand, within CSW01_02455at 489.835 kb on + strand, within CSW01_02455at 489.855 kb on + strand, within CSW01_02455at 489.926 kb on - strand, within CSW01_02455at 489.948 kb on + strandat 489.969 kb on - strandat 489.971 kb on + strandat 490.003 kb on - strandat 490.064 kb on + strandat 490.072 kb on - strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.084 kb on + strandat 490.135 kb on + strandat 490.135 kb on + strandat 490.179 kb on - strand, within CSW01_02460at 490.210 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.215 kb on - strand, within CSW01_02460at 490.220 kb on - strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.260 kb on + strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.268 kb on - strand, within CSW01_02460at 490.320 kb on + strand, within CSW01_02460at 490.367 kb on + strand, within CSW01_02460at 490.443 kb on + strand, within CSW01_02460at 490.491 kb on - strand, within CSW01_02460at 490.621 kb on + strand, within CSW01_02460at 490.672 kb on - strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.717 kb on + strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.725 kb on - strand, within CSW01_02460at 490.735 kb on - strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.930 kb on + strand, within CSW01_02460at 490.958 kb on + strand, within CSW01_02460at 491.040 kb on + strandat 491.077 kb on + strandat 491.085 kb on - strandat 491.122 kb on + strandat 491.136 kb on + strandat 491.136 kb on + strandat 491.136 kb on + strandat 491.141 kb on + strandat 491.144 kb on - strandat 491.144 kb on - strandat 491.149 kb on - strandat 491.189 kb on - strandat 491.237 kb on - strand, within CSW01_02465at 491.237 kb on - strand, within CSW01_02465at 491.237 kb on - strand, within CSW01_02465at 491.249 kb on + strand, within CSW01_02465at 491.254 kb on + strand, within CSW01_02465at 491.257 kb on - strand, within CSW01_02465at 491.298 kb on + strand, within CSW01_02465at 491.304 kb on - strand, within CSW01_02465at 491.328 kb on - strand, within CSW01_02465at 491.367 kb on - strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.452 kb on + strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.619 kb on - strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.858 kb on + strand, within CSW01_02465at 491.866 kb on - strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.933 kb on + strand, within CSW01_02465at 491.936 kb on - strand, within CSW01_02465at 492.019 kb on - strand, within CSW01_02465at 492.039 kb on + strand, within CSW01_02465

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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489,076 + CSW01_02450 0.79 -1.7
489,244 - -0.6
489,348 - -1.8
489,353 + -4.2
489,353 + -2.9
489,353 + -2.7
489,361 - -2.1
489,361 - -4.4
489,420 - CSW01_02455 0.17 -1.4
489,482 + CSW01_02455 0.26 -0.9
489,487 + CSW01_02455 0.26 +1.4
489,487 + CSW01_02455 0.26 -1.8
489,487 + CSW01_02455 0.26 -1.0
489,495 - CSW01_02455 0.27 -2.2
489,495 - CSW01_02455 0.27 -0.1
489,536 + CSW01_02455 0.33 -2.6
489,544 - CSW01_02455 0.34 -1.2
489,616 + CSW01_02455 0.44 +0.2
489,616 + CSW01_02455 0.44 -2.2
489,660 + CSW01_02455 0.51 +1.1
489,695 + CSW01_02455 0.56 -2.4
489,752 + CSW01_02455 0.64 -1.1
489,782 - CSW01_02455 0.68 -1.2
489,782 - CSW01_02455 0.68 -0.8
489,782 - CSW01_02455 0.68 -3.3
489,821 - CSW01_02455 0.73 -2.4
489,826 + CSW01_02455 0.74 +0.2
489,835 + CSW01_02455 0.75 -2.8
489,855 + CSW01_02455 0.78 -0.1
489,926 - CSW01_02455 0.88 -2.4
489,948 + +0.9
489,969 - -2.1
489,971 + -2.9
490,003 - +0.6
490,064 + -3.9
490,072 - +0.7
490,084 + -0.5
490,084 + +0.0
490,084 + -2.8
490,084 + -1.4
490,135 + -3.2
490,135 + -0.9
490,179 - CSW01_02460 0.14 -1.2
490,210 - CSW01_02460 0.17 -2.8
490,215 - CSW01_02460 0.17 -0.1
490,215 - CSW01_02460 0.17 -0.3
490,220 - CSW01_02460 0.18 -2.9
490,260 + CSW01_02460 0.22 -0.1
490,260 + CSW01_02460 0.22 +0.6
490,260 + CSW01_02460 0.22 +0.6
490,260 + CSW01_02460 0.22 -0.8
490,260 + CSW01_02460 0.22 -2.1
490,260 + CSW01_02460 0.22 -0.6
490,268 - CSW01_02460 0.22 +0.1
490,268 - CSW01_02460 0.22 -1.0
490,268 - CSW01_02460 0.22 -1.8
490,268 - CSW01_02460 0.22 -0.2
490,320 + CSW01_02460 0.27 -2.2
490,367 + CSW01_02460 0.32 +0.2
490,443 + CSW01_02460 0.39 -2.7
490,491 - CSW01_02460 0.44 +0.1
490,621 + CSW01_02460 0.56 -2.0
490,672 - CSW01_02460 0.61 -2.1
490,717 + CSW01_02460 0.66 -0.4
490,717 + CSW01_02460 0.66 +0.1
490,717 + CSW01_02460 0.66 -1.6
490,725 - CSW01_02460 0.66 +0.9
490,725 - CSW01_02460 0.66 -0.9
490,735 - CSW01_02460 0.67 -1.8
490,930 + CSW01_02460 0.86 -1.7
490,930 + CSW01_02460 0.86 -2.7
490,958 + CSW01_02460 0.89 +0.2
491,040 + -0.2
491,077 + -2.5
491,085 - +0.9
491,122 + -0.9
491,136 + +0.9
491,136 + -2.2
491,136 + -1.3
491,141 + -0.5
491,144 - -1.2
491,144 - +1.3
491,149 - -0.2
491,189 - +1.0
491,237 - CSW01_02465 0.13 +1.1
491,237 - CSW01_02465 0.13 +0.5
491,237 - CSW01_02465 0.13 +0.4
491,249 + CSW01_02465 0.15 -0.6
491,254 + CSW01_02465 0.15 -0.7
491,257 - CSW01_02465 0.15 +0.5
491,298 + CSW01_02465 0.19 -1.4
491,304 - CSW01_02465 0.20 +0.8
491,328 - CSW01_02465 0.22 +0.2
491,367 - CSW01_02465 0.25 +0.6
491,395 + CSW01_02465 0.28 +0.8
491,395 + CSW01_02465 0.28 +0.6
491,395 + CSW01_02465 0.28 +2.2
491,403 - CSW01_02465 0.28 +0.1
491,403 - CSW01_02465 0.28 +0.7
491,452 + CSW01_02465 0.33 -0.9
491,526 - CSW01_02465 0.40 -0.3
491,526 - CSW01_02465 0.40 +0.9
491,619 - CSW01_02465 0.48 -2.1
491,750 + CSW01_02465 0.60 -0.0
491,750 + CSW01_02465 0.60 +1.4
491,858 + CSW01_02465 0.70 -1.3
491,866 - CSW01_02465 0.70 +0.5
491,907 + CSW01_02465 0.74 +0.4
491,907 + CSW01_02465 0.74 -2.4
491,907 + CSW01_02465 0.74 -3.3
491,933 + CSW01_02465 0.76 +0.2
491,936 - CSW01_02465 0.77 +1.2
492,019 - CSW01_02465 0.84 +0.1
492,039 + CSW01_02465 0.86 +0.6

Or see this region's nucleotide sequence