Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02105

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02100 and CSW01_02105 are separated by 12 nucleotidesCSW01_02105 and CSW01_02110 overlap by 4 nucleotidesCSW01_02110 and CSW01_02115 overlap by 8 nucleotidesCSW01_02115 and CSW01_02120 are separated by 14 nucleotides CSW01_02100: CSW01_02100 - RNase E specificity factor CsrD, at 422,003 to 424,024 _02100 CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476 _02105 CSW01_02110: CSW01_02110 - MSHA biogenesis protein MshJ, at 425,473 to 426,123 _02110 CSW01_02115: CSW01_02115 - MSHA biogenesis protein MshK, at 426,116 to 426,433 _02115 CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 Position (kb) 424 425 426Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 423.083 kb on + strand, within CSW01_02100at 423.091 kb on - strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.112 kb on + strand, within CSW01_02100at 423.120 kb on - strand, within CSW01_02100at 423.137 kb on + strand, within CSW01_02100at 423.147 kb on + strand, within CSW01_02100at 423.147 kb on + strand, within CSW01_02100at 423.155 kb on - strand, within CSW01_02100at 423.184 kb on - strand, within CSW01_02100at 423.271 kb on - strand, within CSW01_02100at 423.414 kb on + strand, within CSW01_02100at 423.415 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.430 kb on - strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.453 kb on + strand, within CSW01_02100at 423.461 kb on - strand, within CSW01_02100at 423.461 kb on - strand, within CSW01_02100at 423.466 kb on - strand, within CSW01_02100at 423.696 kb on + strand, within CSW01_02100at 423.729 kb on + strand, within CSW01_02100at 423.737 kb on - strand, within CSW01_02100at 423.739 kb on + strand, within CSW01_02100at 423.855 kb on + strandat 423.857 kb on + strandat 423.857 kb on + strandat 423.857 kb on + strandat 423.881 kb on - strandat 423.899 kb on + strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.907 kb on - strandat 423.923 kb on + strandat 423.939 kb on - strandat 423.981 kb on + strandat 423.981 kb on + strandat 423.983 kb on + strandat 423.990 kb on - strandat 424.027 kb on + strandat 424.053 kb on + strandat 424.071 kb on + strandat 424.071 kb on + strandat 424.079 kb on - strandat 424.080 kb on - strandat 424.093 kb on + strandat 424.093 kb on + strandat 424.093 kb on + strandat 424.101 kb on - strandat 424.126 kb on + strandat 424.128 kb on - strandat 424.128 kb on - strandat 424.134 kb on - strandat 424.220 kb on + strand, within CSW01_02105at 424.220 kb on + strand, within CSW01_02105at 424.228 kb on - strand, within CSW01_02105at 424.228 kb on - strand, within CSW01_02105at 424.229 kb on + strand, within CSW01_02105at 424.239 kb on + strand, within CSW01_02105at 424.252 kb on - strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.285 kb on + strand, within CSW01_02105at 424.293 kb on - strand, within CSW01_02105at 424.345 kb on - strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.385 kb on + strand, within CSW01_02105at 424.389 kb on - strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.403 kb on + strand, within CSW01_02105at 424.404 kb on - strand, within CSW01_02105at 424.411 kb on - strand, within CSW01_02105at 424.418 kb on - strand, within CSW01_02105at 424.433 kb on + strand, within CSW01_02105at 424.449 kb on + strand, within CSW01_02105at 424.474 kb on - strand, within CSW01_02105at 424.474 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.605 kb on - strand, within CSW01_02105at 424.610 kb on - strand, within CSW01_02105at 424.685 kb on + strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.700 kb on + strand, within CSW01_02105at 424.708 kb on - strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.728 kb on - strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.743 kb on + strand, within CSW01_02105at 424.778 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.964 kb on + strand, within CSW01_02105at 424.973 kb on - strand, within CSW01_02105at 424.982 kb on + strand, within CSW01_02105at 425.003 kb on + strand, within CSW01_02105at 425.006 kb on - strand, within CSW01_02105at 425.040 kb on + strand, within CSW01_02105at 425.048 kb on - strand, within CSW01_02105at 425.181 kb on + strand, within CSW01_02105at 425.190 kb on + strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.289 kb on - strand, within CSW01_02105at 425.429 kb on + strandat 425.439 kb on + strandat 425.439 kb on + strandat 425.446 kb on + strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.547 kb on + strand, within CSW01_02110at 425.547 kb on + strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.574 kb on - strand, within CSW01_02110at 425.585 kb on + strand, within CSW01_02110at 425.597 kb on - strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.723 kb on + strand, within CSW01_02110at 425.811 kb on - strand, within CSW01_02110at 425.875 kb on - strand, within CSW01_02110at 425.953 kb on + strand, within CSW01_02110at 425.989 kb on + strand, within CSW01_02110at 426.004 kb on - strand, within CSW01_02110at 426.063 kb on + strandat 426.071 kb on - strandat 426.081 kb on + strandat 426.082 kb on + strandat 426.096 kb on - strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.128 kb on + strandat 426.131 kb on - strandat 426.155 kb on + strand, within CSW01_02115at 426.184 kb on - strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.206 kb on - strand, within CSW01_02115at 426.251 kb on + strand, within CSW01_02115at 426.258 kb on + strand, within CSW01_02115at 426.261 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.319 kb on + strand, within CSW01_02115at 426.321 kb on + strand, within CSW01_02115at 426.322 kb on - strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.420 kb on + strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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423,083 + CSW01_02100 0.53 -0.3
423,091 - CSW01_02100 0.54 -2.1
423,112 + CSW01_02100 0.55 -3.4
423,112 + CSW01_02100 0.55 +0.7
423,112 + CSW01_02100 0.55 -0.3
423,120 - CSW01_02100 0.55 -1.4
423,137 + CSW01_02100 0.56 -1.4
423,147 + CSW01_02100 0.57 -0.9
423,147 + CSW01_02100 0.57 +0.2
423,155 - CSW01_02100 0.57 -0.6
423,184 - CSW01_02100 0.58 -0.9
423,271 - CSW01_02100 0.63 -3.6
423,414 + CSW01_02100 0.70 +1.6
423,415 - CSW01_02100 0.70 +0.2
423,430 - CSW01_02100 0.71 -1.9
423,430 - CSW01_02100 0.71 -0.5
423,430 - CSW01_02100 0.71 -1.1
423,453 + CSW01_02100 0.72 -1.3
423,453 + CSW01_02100 0.72 -1.4
423,453 + CSW01_02100 0.72 -0.5
423,453 + CSW01_02100 0.72 -0.9
423,461 - CSW01_02100 0.72 -2.6
423,461 - CSW01_02100 0.72 +1.1
423,466 - CSW01_02100 0.72 -4.5
423,696 + CSW01_02100 0.84 +0.6
423,729 + CSW01_02100 0.85 -3.6
423,737 - CSW01_02100 0.86 +0.8
423,739 + CSW01_02100 0.86 -1.6
423,855 + -0.5
423,857 + -0.7
423,857 + +0.7
423,857 + +0.3
423,881 - +1.2
423,899 + +2.4
423,907 - -0.5
423,907 - -1.0
423,907 - -3.5
423,907 - +1.4
423,923 + -1.2
423,939 - -0.7
423,981 + -3.1
423,981 + -0.2
423,983 + -0.8
423,990 - -1.1
424,027 + +1.9
424,053 + -4.8
424,071 + -2.4
424,071 + -0.1
424,079 - -0.5
424,080 - +0.2
424,093 + -2.6
424,093 + -0.4
424,093 + -3.0
424,101 - +0.8
424,126 + +0.8
424,128 - -0.3
424,128 - -0.1
424,134 - +0.0
424,220 + CSW01_02105 0.13 -1.1
424,220 + CSW01_02105 0.13 +0.2
424,228 - CSW01_02105 0.13 -2.1
424,228 - CSW01_02105 0.13 -0.3
424,229 + CSW01_02105 0.13 -0.4
424,239 + CSW01_02105 0.14 +0.3
424,252 - CSW01_02105 0.15 -3.2
424,285 + CSW01_02105 0.17 -1.7
424,285 + CSW01_02105 0.17 -1.0
424,285 + CSW01_02105 0.17 -0.6
424,285 + CSW01_02105 0.17 -1.8
424,285 + CSW01_02105 0.17 -1.1
424,293 - CSW01_02105 0.18 +0.5
424,345 - CSW01_02105 0.21 -0.1
424,385 + CSW01_02105 0.24 -0.1
424,385 + CSW01_02105 0.24 -0.0
424,385 + CSW01_02105 0.24 -2.2
424,389 - CSW01_02105 0.24 +0.2
424,403 + CSW01_02105 0.25 -0.4
424,403 + CSW01_02105 0.25 -3.1
424,403 + CSW01_02105 0.25 -3.8
424,403 + CSW01_02105 0.25 +0.3
424,403 + CSW01_02105 0.25 -0.9
424,403 + CSW01_02105 0.25 -1.9
424,404 - CSW01_02105 0.25 -0.7
424,411 - CSW01_02105 0.26 -0.1
424,418 - CSW01_02105 0.26 -0.0
424,433 + CSW01_02105 0.28 -1.8
424,449 + CSW01_02105 0.29 -2.3
424,474 - CSW01_02105 0.30 -2.2
424,474 - CSW01_02105 0.30 -0.4
424,574 - CSW01_02105 0.37 -3.6
424,574 - CSW01_02105 0.37 -0.9
424,605 - CSW01_02105 0.39 -0.0
424,610 - CSW01_02105 0.40 +1.1
424,685 + CSW01_02105 0.45 -0.6
424,693 - CSW01_02105 0.46 -2.7
424,693 - CSW01_02105 0.46 -2.5
424,700 + CSW01_02105 0.46 -0.8
424,708 - CSW01_02105 0.47 -1.9
424,720 + CSW01_02105 0.47 -0.4
424,720 + CSW01_02105 0.47 +0.5
424,728 - CSW01_02105 0.48 -1.6
424,734 + CSW01_02105 0.48 -1.1
424,734 + CSW01_02105 0.48 +0.7
424,734 + CSW01_02105 0.48 -3.8
424,742 - CSW01_02105 0.49 -0.2
424,742 - CSW01_02105 0.49 -0.7
424,742 - CSW01_02105 0.49 -3.2
424,742 - CSW01_02105 0.49 -1.4
424,743 + CSW01_02105 0.49 -1.7
424,778 + CSW01_02105 0.51 -0.9
424,801 + CSW01_02105 0.53 +0.3
424,801 + CSW01_02105 0.53 -1.9
424,818 + CSW01_02105 0.54 -0.6
424,818 + CSW01_02105 0.54 +0.8
424,826 - CSW01_02105 0.55 -0.6
424,826 - CSW01_02105 0.55 -3.4
424,964 + CSW01_02105 0.64 -1.8
424,973 - CSW01_02105 0.65 +0.7
424,982 + CSW01_02105 0.66 -1.7
425,003 + CSW01_02105 0.67 +0.5
425,006 - CSW01_02105 0.67 +0.6
425,040 + CSW01_02105 0.70 -1.2
425,048 - CSW01_02105 0.70 -0.4
425,181 + CSW01_02105 0.79 -2.7
425,190 + CSW01_02105 0.80 +0.2
425,198 - CSW01_02105 0.81 -3.1
425,198 - CSW01_02105 0.81 +0.6
425,283 + CSW01_02105 0.87 -3.6
425,283 + CSW01_02105 0.87 -1.5
425,289 - CSW01_02105 0.87 -2.3
425,429 + +0.6
425,439 + +1.4
425,439 + -4.0
425,446 + +0.5
425,447 - -0.1
425,447 - -0.2
425,447 - +0.5
425,447 - -2.7
425,547 + CSW01_02110 0.11 -3.2
425,547 + CSW01_02110 0.11 +0.1
425,555 - CSW01_02110 0.13 +2.7
425,555 - CSW01_02110 0.13 -3.5
425,555 - CSW01_02110 0.13 -0.5
425,574 - CSW01_02110 0.16 +0.2
425,585 + CSW01_02110 0.17 -3.8
425,597 - CSW01_02110 0.19 +0.4
425,600 + CSW01_02110 0.20 +0.1
425,600 + CSW01_02110 0.20 -0.4
425,600 + CSW01_02110 0.20 -0.7
425,600 + CSW01_02110 0.20 -3.1
425,600 + CSW01_02110 0.20 +0.9
425,600 + CSW01_02110 0.20 -2.9
425,600 + CSW01_02110 0.20 -2.3
425,600 + CSW01_02110 0.20 -0.2
425,600 + CSW01_02110 0.20 +1.0
425,608 - CSW01_02110 0.21 +0.0
425,608 - CSW01_02110 0.21 +0.5
425,608 - CSW01_02110 0.21 +0.6
425,608 - CSW01_02110 0.21 -0.7
425,608 - CSW01_02110 0.21 +0.9
425,723 + CSW01_02110 0.38 -2.9
425,811 - CSW01_02110 0.52 +0.2
425,875 - CSW01_02110 0.62 +1.0
425,953 + CSW01_02110 0.74 -0.3
425,989 + CSW01_02110 0.79 -4.1
426,004 - CSW01_02110 0.82 -2.3
426,063 + -0.5
426,071 - +0.8
426,081 + -1.6
426,082 + +1.1
426,096 - -1.1
426,098 + -0.3
426,098 + -0.5
426,098 + -2.5
426,128 + -3.1
426,131 - +0.3
426,155 + CSW01_02115 0.12 +0.6
426,184 - CSW01_02115 0.21 -0.4
426,188 + CSW01_02115 0.23 -0.3
426,188 + CSW01_02115 0.23 -4.8
426,206 - CSW01_02115 0.28 -2.5
426,251 + CSW01_02115 0.42 +1.8
426,258 + CSW01_02115 0.45 -2.1
426,261 - CSW01_02115 0.46 -1.4
426,293 - CSW01_02115 0.56 -1.5
426,293 - CSW01_02115 0.56 -1.2
426,314 + CSW01_02115 0.62 -2.0
426,314 + CSW01_02115 0.62 +0.1
426,314 + CSW01_02115 0.62 +1.0
426,314 + CSW01_02115 0.62 -0.9
426,319 + CSW01_02115 0.64 +0.0
426,321 + CSW01_02115 0.64 -1.1
426,322 - CSW01_02115 0.65 -3.0
426,386 + CSW01_02115 0.85 -2.0
426,386 + CSW01_02115 0.85 +1.1
426,394 - CSW01_02115 0.87 -2.7
426,394 - CSW01_02115 0.87 +0.9
426,420 + -2.0
426,428 - -1.4
426,428 - -0.4
426,428 - -0.4
426,467 + -3.5

Or see this region's nucleotide sequence