Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02015 and CSW01_02020 overlap by 8 nucleotides CSW01_02020 and CSW01_02025 are separated by 534 nucleotides
CSW01_02015: CSW01_02015 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 397,461 to 399,194
_02015
CSW01_02020: CSW01_02020 - phosphoadenosine phosphosulfate reductase, at 399,187 to 399,948
_02020
CSW01_02025: CSW01_02025 - 16S ribosomal RNA, at 400,483 to 402,033
_02025
Position (kb) 399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.218 kb on + strand, within CSW01_02015 at 398.218 kb on + strand, within CSW01_02015 at 398.218 kb on + strand, within CSW01_02015 at 398.218 kb on + strand, within CSW01_02015 at 398.258 kb on + strand, within CSW01_02015 at 398.526 kb on - strand, within CSW01_02015 at 398.648 kb on + strand, within CSW01_02015 at 398.712 kb on - strand, within CSW01_02015 at 398.712 kb on - strand, within CSW01_02015 at 398.714 kb on + strand, within CSW01_02015 at 398.719 kb on + strand, within CSW01_02015 at 398.719 kb on + strand, within CSW01_02015 at 398.775 kb on - strand, within CSW01_02015 at 398.917 kb on + strand, within CSW01_02015 at 398.917 kb on + strand, within CSW01_02015 at 399.030 kb on - strand at 399.083 kb on + strand at 399.282 kb on + strand, within CSW01_02020 at 399.381 kb on - strand, within CSW01_02020 at 399.483 kb on + strand, within CSW01_02020 at 399.610 kb on - strand, within CSW01_02020 at 399.665 kb on + strand, within CSW01_02020 at 399.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 398,218 + CSW01_02015 0.44 -3.1 398,218 + CSW01_02015 0.44 +2.2 398,218 + CSW01_02015 0.44 +1.4 398,218 + CSW01_02015 0.44 +1.6 398,258 + CSW01_02015 0.46 +1.2 398,526 - CSW01_02015 0.61 -0.0 398,648 + CSW01_02015 0.68 +1.7 398,712 - CSW01_02015 0.72 +1.4 398,712 - CSW01_02015 0.72 -2.9 398,714 + CSW01_02015 0.72 +1.7 398,719 + CSW01_02015 0.73 -0.6 398,719 + CSW01_02015 0.73 +1.2 398,775 - CSW01_02015 0.76 +1.0 398,917 + CSW01_02015 0.84 +0.3 398,917 + CSW01_02015 0.84 -2.4 399,030 - +0.4 399,083 + -1.5 399,282 + CSW01_02020 0.12 -2.0 399,381 - CSW01_02020 0.25 +0.8 399,483 + CSW01_02020 0.39 -2.6 399,610 - CSW01_02020 0.56 -0.0 399,665 + CSW01_02020 0.63 -1.9 399,916 - -0.2
Or see this region's nucleotide sequence