Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01970 and CSW01_01975 are separated by 116 nucleotides CSW01_01975 and CSW01_01980 are separated by 9 nucleotides CSW01_01980 and CSW01_01985 are separated by 354 nucleotides
CSW01_01970: CSW01_01970 - MBL fold metallo-hydrolase, at 390,482 to 391,660
_01970
CSW01_01975: CSW01_01975 - chemotaxis protein CheX, at 391,777 to 392,238
_01975
CSW01_01980: CSW01_01980 - transcriptional regulator Zur, at 392,248 to 392,715
_01980
CSW01_01985: CSW01_01985 - tRNA dihydrouridine(20/20a) synthase DusA, at 393,070 to 394,053
_01985
Position (kb) 392
393 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 391.270 kb on - strand, within CSW01_01970 at 391.283 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.321 kb on + strand, within CSW01_01970 at 391.327 kb on + strand, within CSW01_01970 at 391.327 kb on + strand, within CSW01_01970 at 391.329 kb on - strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.435 kb on - strand, within CSW01_01970 at 391.447 kb on + strand, within CSW01_01970 at 391.482 kb on - strand, within CSW01_01970 at 391.485 kb on + strand, within CSW01_01970 at 391.485 kb on + strand, within CSW01_01970 at 391.493 kb on - strand, within CSW01_01970 at 391.495 kb on + strand, within CSW01_01970 at 391.503 kb on - strand, within CSW01_01970 at 391.520 kb on - strand, within CSW01_01970 at 391.520 kb on - strand, within CSW01_01970 at 391.523 kb on + strand, within CSW01_01970 at 391.529 kb on + strand, within CSW01_01970 at 391.529 kb on + strand, within CSW01_01970 at 391.549 kb on - strand at 391.551 kb on + strand at 391.564 kb on - strand at 391.591 kb on + strand at 391.591 kb on + strand at 391.683 kb on - strand at 391.779 kb on + strand at 391.815 kb on - strand at 391.954 kb on - strand, within CSW01_01975 at 392.001 kb on - strand, within CSW01_01975 at 392.010 kb on - strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.101 kb on + strand, within CSW01_01975 at 392.101 kb on + strand, within CSW01_01975 at 392.109 kb on - strand, within CSW01_01975 at 392.109 kb on - strand, within CSW01_01975 at 392.248 kb on - strand at 392.283 kb on + strand at 392.309 kb on + strand, within CSW01_01980 at 392.327 kb on - strand, within CSW01_01980 at 392.329 kb on + strand, within CSW01_01980 at 392.358 kb on + strand, within CSW01_01980 at 392.390 kb on + strand, within CSW01_01980 at 392.400 kb on + strand, within CSW01_01980 at 392.408 kb on - strand, within CSW01_01980 at 392.417 kb on + strand, within CSW01_01980 at 392.423 kb on - strand, within CSW01_01980 at 392.425 kb on + strand, within CSW01_01980 at 392.433 kb on - strand, within CSW01_01980 at 392.462 kb on - strand, within CSW01_01980 at 392.524 kb on - strand, within CSW01_01980 at 392.528 kb on + strand, within CSW01_01980 at 392.528 kb on + strand, within CSW01_01980 at 392.536 kb on - strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.591 kb on - strand, within CSW01_01980 at 392.593 kb on - strand, within CSW01_01980 at 392.603 kb on + strand, within CSW01_01980 at 392.624 kb on + strand, within CSW01_01980 at 392.624 kb on + strand, within CSW01_01980 at 392.703 kb on - strand at 392.703 kb on - strand at 392.717 kb on - strand at 392.723 kb on - strand at 392.821 kb on + strand at 392.901 kb on + strand at 392.902 kb on + strand at 392.902 kb on + strand at 392.910 kb on - strand at 392.971 kb on + strand at 392.974 kb on - strand at 393.108 kb on + strand at 393.108 kb on + strand at 393.154 kb on + strand at 393.154 kb on + strand at 393.163 kb on + strand at 393.163 kb on + strand at 393.165 kb on + strand at 393.165 kb on + strand at 393.171 kb on - strand, within CSW01_01985 at 393.173 kb on - strand, within CSW01_01985 at 393.173 kb on - strand, within CSW01_01985 at 393.238 kb on - strand, within CSW01_01985 at 393.293 kb on + strand, within CSW01_01985 at 393.333 kb on + strand, within CSW01_01985 at 393.586 kb on + strand, within CSW01_01985 at 393.594 kb on - strand, within CSW01_01985 at 393.690 kb on + strand, within CSW01_01985 at 393.691 kb on + strand, within CSW01_01985 at 393.696 kb on - strand, within CSW01_01985
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 391,270 - CSW01_01970 0.67 -0.8 391,283 + CSW01_01970 0.68 -0.0 391,293 + CSW01_01970 0.69 +0.9 391,293 + CSW01_01970 0.69 -2.9 391,293 + CSW01_01970 0.69 -2.8 391,293 + CSW01_01970 0.69 +1.3 391,293 + CSW01_01970 0.69 -1.6 391,293 + CSW01_01970 0.69 -0.6 391,293 + CSW01_01970 0.69 -3.1 391,301 - CSW01_01970 0.69 -2.0 391,301 - CSW01_01970 0.69 -3.3 391,301 - CSW01_01970 0.69 -0.4 391,321 + CSW01_01970 0.71 +1.0 391,327 + CSW01_01970 0.72 +0.5 391,327 + CSW01_01970 0.72 -3.4 391,329 - CSW01_01970 0.72 -0.2 391,373 + CSW01_01970 0.76 +1.7 391,373 + CSW01_01970 0.76 -2.0 391,373 + CSW01_01970 0.76 -1.3 391,373 + CSW01_01970 0.76 +0.8 391,373 + CSW01_01970 0.76 -1.6 391,381 - CSW01_01970 0.76 +0.1 391,381 - CSW01_01970 0.76 +1.8 391,381 - CSW01_01970 0.76 -3.2 391,381 - CSW01_01970 0.76 -3.5 391,381 - CSW01_01970 0.76 -1.8 391,381 - CSW01_01970 0.76 +1.6 391,381 - CSW01_01970 0.76 -0.3 391,435 - CSW01_01970 0.81 -4.3 391,447 + CSW01_01970 0.82 -0.4 391,482 - CSW01_01970 0.85 -1.6 391,485 + CSW01_01970 0.85 -0.0 391,485 + CSW01_01970 0.85 -2.1 391,493 - CSW01_01970 0.86 +0.3 391,495 + CSW01_01970 0.86 -3.5 391,503 - CSW01_01970 0.87 +0.1 391,520 - CSW01_01970 0.88 +0.9 391,520 - CSW01_01970 0.88 +0.9 391,523 + CSW01_01970 0.88 -0.3 391,529 + CSW01_01970 0.89 -2.4 391,529 + CSW01_01970 0.89 +0.4 391,549 - +1.5 391,551 + -1.7 391,564 - +0.1 391,591 + -3.0 391,591 + -0.6 391,683 - -3.8 391,779 + -0.3 391,815 - +1.0 391,954 - CSW01_01975 0.38 -3.0 392,001 - CSW01_01975 0.48 -0.6 392,010 - CSW01_01975 0.50 -1.4 392,052 + CSW01_01975 0.60 -0.2 392,052 + CSW01_01975 0.60 -1.2 392,052 + CSW01_01975 0.60 -3.2 392,067 + CSW01_01975 0.63 -0.6 392,067 + CSW01_01975 0.63 -1.6 392,067 + CSW01_01975 0.63 +0.2 392,067 + CSW01_01975 0.63 -1.1 392,067 + CSW01_01975 0.63 -2.2 392,067 + CSW01_01975 0.63 +0.6 392,067 + CSW01_01975 0.63 -1.2 392,067 + CSW01_01975 0.63 -0.9 392,067 + CSW01_01975 0.63 +0.2 392,067 + CSW01_01975 0.63 -0.4 392,067 + CSW01_01975 0.63 -0.2 392,067 + CSW01_01975 0.63 -2.8 392,067 + CSW01_01975 0.63 +0.4 392,067 + CSW01_01975 0.63 -1.7 392,067 + CSW01_01975 0.63 +0.6 392,075 - CSW01_01975 0.65 +1.2 392,075 - CSW01_01975 0.65 +0.1 392,075 - CSW01_01975 0.65 +1.4 392,075 - CSW01_01975 0.65 -4.0 392,075 - CSW01_01975 0.65 -0.9 392,075 - CSW01_01975 0.65 -1.0 392,075 - CSW01_01975 0.65 +1.0 392,075 - CSW01_01975 0.65 +0.5 392,075 - CSW01_01975 0.65 -0.6 392,075 - CSW01_01975 0.65 +0.3 392,075 - CSW01_01975 0.65 -3.4 392,075 - CSW01_01975 0.65 -1.2 392,075 - CSW01_01975 0.65 +0.9 392,101 + CSW01_01975 0.70 -3.0 392,101 + CSW01_01975 0.70 -0.1 392,109 - CSW01_01975 0.72 -0.6 392,109 - CSW01_01975 0.72 -0.2 392,248 - +0.9 392,283 + +0.2 392,309 + CSW01_01980 0.13 +0.1 392,327 - CSW01_01980 0.17 -2.0 392,329 + CSW01_01980 0.17 -3.9 392,358 + CSW01_01980 0.24 -2.7 392,390 + CSW01_01980 0.30 +0.6 392,400 + CSW01_01980 0.32 -0.0 392,408 - CSW01_01980 0.34 -3.7 392,417 + CSW01_01980 0.36 -3.1 392,423 - CSW01_01980 0.37 -3.6 392,425 + CSW01_01980 0.38 -0.2 392,433 - CSW01_01980 0.40 -0.8 392,462 - CSW01_01980 0.46 -0.1 392,524 - CSW01_01980 0.59 -2.2 392,528 + CSW01_01980 0.60 -1.4 392,528 + CSW01_01980 0.60 -0.5 392,536 - CSW01_01980 0.62 +0.2 392,583 + CSW01_01980 0.72 -0.8 392,583 + CSW01_01980 0.72 -1.2 392,583 + CSW01_01980 0.72 +0.7 392,591 - CSW01_01980 0.73 -0.8 392,593 - CSW01_01980 0.74 -1.2 392,603 + CSW01_01980 0.76 -2.4 392,624 + CSW01_01980 0.80 -0.8 392,624 + CSW01_01980 0.80 -1.7 392,703 - -2.3 392,703 - -2.0 392,717 - +0.1 392,723 - +1.4 392,821 + -0.7 392,901 + +0.7 392,902 + -0.3 392,902 + -0.0 392,910 - +2.3 392,971 + +1.2 392,974 - +1.2 393,108 + +0.2 393,108 + -1.2 393,154 + -2.2 393,154 + +1.0 393,163 + -2.2 393,163 + +0.5 393,165 + +1.0 393,165 + +1.4 393,171 - CSW01_01985 0.10 -0.8 393,173 - CSW01_01985 0.10 +0.8 393,173 - CSW01_01985 0.10 +2.4 393,238 - CSW01_01985 0.17 +0.7 393,293 + CSW01_01985 0.23 -4.0 393,333 + CSW01_01985 0.27 -2.0 393,586 + CSW01_01985 0.52 -1.3 393,594 - CSW01_01985 0.53 +0.6 393,690 + CSW01_01985 0.63 -3.1 393,691 + CSW01_01985 0.63 -2.2 393,696 - CSW01_01985 0.64 -1.8
Or see this region's nucleotide sequence