Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01535

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01530 and CSW01_01535 overlap by 46 nucleotidesCSW01_01535 and CSW01_01540 are separated by 98 nucleotides CSW01_01530: CSW01_01530 - cyclic nucleotide-binding protein, at 306,651 to 308,474 _01530 CSW01_01535: CSW01_01535 - hypothetical protein, at 308,429 to 308,635 _01535 CSW01_01540: CSW01_01540 - 3-phenylpropionate MFS transporter, at 308,734 to 309,924 _01540 Position (kb) 308 309Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.429 kb on + strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.432 kb on - strand, within CSW01_01530at 307.437 kb on - strand, within CSW01_01530at 307.552 kb on - strand, within CSW01_01530at 307.607 kb on - strand, within CSW01_01530at 307.642 kb on - strand, within CSW01_01530at 307.661 kb on + strand, within CSW01_01530at 307.677 kb on + strand, within CSW01_01530at 307.711 kb on - strand, within CSW01_01530at 307.715 kb on - strand, within CSW01_01530at 307.753 kb on - strand, within CSW01_01530at 307.768 kb on + strand, within CSW01_01530at 307.838 kb on + strand, within CSW01_01530at 307.851 kb on - strand, within CSW01_01530at 307.882 kb on + strand, within CSW01_01530at 307.888 kb on + strand, within CSW01_01530at 307.896 kb on - strand, within CSW01_01530at 307.910 kb on + strand, within CSW01_01530at 307.931 kb on - strand, within CSW01_01530at 307.955 kb on + strand, within CSW01_01530at 307.959 kb on + strand, within CSW01_01530at 307.963 kb on - strand, within CSW01_01530at 307.967 kb on + strand, within CSW01_01530at 307.974 kb on + strand, within CSW01_01530at 307.979 kb on + strand, within CSW01_01530at 308.032 kb on + strand, within CSW01_01530at 308.032 kb on + strand, within CSW01_01530at 308.040 kb on - strand, within CSW01_01530at 308.077 kb on + strand, within CSW01_01530at 308.141 kb on + strand, within CSW01_01530at 308.190 kb on - strand, within CSW01_01530at 308.213 kb on - strand, within CSW01_01530at 308.213 kb on - strand, within CSW01_01530at 308.255 kb on - strand, within CSW01_01530at 308.262 kb on + strand, within CSW01_01530at 308.272 kb on + strand, within CSW01_01530at 308.279 kb on + strand, within CSW01_01530at 308.279 kb on + strand, within CSW01_01530at 308.301 kb on - strandat 308.311 kb on - strandat 308.311 kb on - strandat 308.328 kb on + strandat 308.346 kb on - strandat 308.346 kb on - strandat 308.354 kb on - strandat 308.354 kb on - strandat 308.358 kb on + strandat 308.358 kb on + strandat 308.364 kb on - strandat 308.383 kb on - strandat 308.391 kb on + strandat 308.391 kb on + strandat 308.399 kb on - strandat 308.399 kb on - strandat 308.406 kb on + strandat 308.409 kb on - strandat 308.425 kb on + strandat 308.425 kb on + strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.433 kb on - strandat 308.436 kb on + strandat 308.499 kb on + strand, within CSW01_01535at 308.499 kb on + strand, within CSW01_01535at 308.540 kb on + strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.548 kb on - strand, within CSW01_01535at 308.553 kb on - strand, within CSW01_01535at 308.579 kb on + strand, within CSW01_01535at 308.590 kb on - strand, within CSW01_01535at 308.687 kb on + strandat 308.695 kb on - strandat 308.702 kb on + strandat 308.825 kb on + strandat 308.825 kb on + strandat 308.825 kb on + strandat 308.861 kb on - strand, within CSW01_01540at 308.862 kb on - strand, within CSW01_01540at 308.872 kb on + strand, within CSW01_01540at 308.879 kb on + strand, within CSW01_01540at 308.880 kb on - strand, within CSW01_01540at 308.897 kb on - strand, within CSW01_01540at 308.930 kb on + strand, within CSW01_01540at 308.940 kb on + strand, within CSW01_01540at 308.955 kb on + strand, within CSW01_01540at 308.969 kb on - strand, within CSW01_01540at 309.041 kb on - strand, within CSW01_01540at 309.043 kb on - strand, within CSW01_01540at 309.043 kb on - strand, within CSW01_01540at 309.053 kb on - strand, within CSW01_01540at 309.057 kb on + strand, within CSW01_01540at 309.057 kb on - strand, within CSW01_01540at 309.070 kb on - strand, within CSW01_01540at 309.096 kb on + strand, within CSW01_01540at 309.096 kb on + strand, within CSW01_01540at 309.144 kb on - strand, within CSW01_01540at 309.226 kb on + strand, within CSW01_01540at 309.231 kb on + strand, within CSW01_01540at 309.239 kb on - strand, within CSW01_01540at 309.269 kb on + strand, within CSW01_01540at 309.269 kb on + strand, within CSW01_01540at 309.277 kb on - strand, within CSW01_01540at 309.277 kb on - strand, within CSW01_01540at 309.300 kb on + strand, within CSW01_01540at 309.302 kb on - strand, within CSW01_01540at 309.302 kb on - strand, within CSW01_01540at 309.304 kb on + strand, within CSW01_01540at 309.314 kb on + strand, within CSW01_01540at 309.330 kb on + strand, within CSW01_01540at 309.338 kb on - strand, within CSW01_01540at 309.379 kb on + strand, within CSW01_01540at 309.382 kb on - strand, within CSW01_01540at 309.399 kb on + strand, within CSW01_01540at 309.399 kb on + strand, within CSW01_01540at 309.407 kb on - strand, within CSW01_01540at 309.407 kb on - strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.470 kb on + strand, within CSW01_01540at 309.478 kb on - strand, within CSW01_01540at 309.478 kb on - strand, within CSW01_01540at 309.490 kb on + strand, within CSW01_01540at 309.513 kb on + strand, within CSW01_01540at 309.513 kb on + strand, within CSW01_01540at 309.521 kb on - strand, within CSW01_01540at 309.521 kb on - strand, within CSW01_01540at 309.526 kb on + strand, within CSW01_01540at 309.546 kb on + strand, within CSW01_01540at 309.583 kb on + strand, within CSW01_01540at 309.583 kb on + strand, within CSW01_01540at 309.583 kb on + strand, within CSW01_01540at 309.590 kb on - strand, within CSW01_01540at 309.607 kb on + strand, within CSW01_01540at 309.607 kb on + strand, within CSW01_01540at 309.607 kb on + strand, within CSW01_01540at 309.615 kb on - strand, within CSW01_01540at 309.615 kb on - strand, within CSW01_01540at 309.615 kb on - strand, within CSW01_01540

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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307,429 + CSW01_01530 0.43 +2.5
307,429 + CSW01_01530 0.43 +1.2
307,429 + CSW01_01530 0.43 +1.2
307,432 - CSW01_01530 0.43 +0.5
307,432 - CSW01_01530 0.43 -1.0
307,432 - CSW01_01530 0.43 -2.4
307,432 - CSW01_01530 0.43 +2.7
307,432 - CSW01_01530 0.43 +2.4
307,432 - CSW01_01530 0.43 -1.1
307,432 - CSW01_01530 0.43 -0.4
307,432 - CSW01_01530 0.43 +0.2
307,432 - CSW01_01530 0.43 +0.7
307,437 - CSW01_01530 0.43 +0.7
307,552 - CSW01_01530 0.49 +1.7
307,607 - CSW01_01530 0.52 +0.8
307,642 - CSW01_01530 0.54 +1.1
307,661 + CSW01_01530 0.55 +0.7
307,677 + CSW01_01530 0.56 -1.1
307,711 - CSW01_01530 0.58 +0.7
307,715 - CSW01_01530 0.58 +2.0
307,753 - CSW01_01530 0.60 -0.3
307,768 + CSW01_01530 0.61 +1.5
307,838 + CSW01_01530 0.65 -1.0
307,851 - CSW01_01530 0.66 +0.7
307,882 + CSW01_01530 0.67 -0.0
307,888 + CSW01_01530 0.68 +2.0
307,896 - CSW01_01530 0.68 -0.8
307,910 + CSW01_01530 0.69 -0.3
307,931 - CSW01_01530 0.70 -1.6
307,955 + CSW01_01530 0.71 +0.1
307,959 + CSW01_01530 0.72 +2.4
307,963 - CSW01_01530 0.72 -1.8
307,967 + CSW01_01530 0.72 +1.8
307,974 + CSW01_01530 0.73 -0.3
307,979 + CSW01_01530 0.73 -1.9
308,032 + CSW01_01530 0.76 -0.6
308,032 + CSW01_01530 0.76 -3.7
308,040 - CSW01_01530 0.76 -1.1
308,077 + CSW01_01530 0.78 +0.6
308,141 + CSW01_01530 0.82 +0.6
308,190 - CSW01_01530 0.84 +0.5
308,213 - CSW01_01530 0.86 -0.2
308,213 - CSW01_01530 0.86 +0.4
308,255 - CSW01_01530 0.88 -2.4
308,262 + CSW01_01530 0.88 +2.3
308,272 + CSW01_01530 0.89 -0.1
308,279 + CSW01_01530 0.89 -1.8
308,279 + CSW01_01530 0.89 +0.3
308,301 - -0.8
308,311 - -0.0
308,311 - -2.6
308,328 + +2.3
308,346 - +2.1
308,346 - +2.5
308,354 - +1.1
308,354 - +0.3
308,358 + -0.3
308,358 + -0.8
308,364 - -2.5
308,383 - -2.3
308,391 + -4.0
308,391 + +0.8
308,399 - +1.4
308,399 - +0.9
308,406 + -1.0
308,409 - -0.8
308,425 + +1.8
308,425 + -2.1
308,433 - -1.6
308,433 - +0.2
308,433 - -1.8
308,433 - -1.4
308,436 + +0.8
308,499 + CSW01_01535 0.34 +1.1
308,499 + CSW01_01535 0.34 -1.1
308,540 + CSW01_01535 0.54 -2.0
308,548 - CSW01_01535 0.57 -0.1
308,548 - CSW01_01535 0.57 -0.7
308,548 - CSW01_01535 0.57 -1.2
308,553 - CSW01_01535 0.60 -0.2
308,579 + CSW01_01535 0.72 -1.4
308,590 - CSW01_01535 0.78 -3.4
308,687 + -0.3
308,695 - +0.8
308,702 + -4.8
308,825 + +0.6
308,825 + +0.8
308,825 + -1.4
308,861 - CSW01_01540 0.11 +2.3
308,862 - CSW01_01540 0.11 +1.1
308,872 + CSW01_01540 0.12 -0.2
308,879 + CSW01_01540 0.12 -1.3
308,880 - CSW01_01540 0.12 -1.1
308,897 - CSW01_01540 0.14 -4.1
308,930 + CSW01_01540 0.16 +1.9
308,940 + CSW01_01540 0.17 -3.9
308,955 + CSW01_01540 0.19 +1.2
308,969 - CSW01_01540 0.20 -1.4
309,041 - CSW01_01540 0.26 -0.1
309,043 - CSW01_01540 0.26 +0.2
309,043 - CSW01_01540 0.26 +0.7
309,053 - CSW01_01540 0.27 -1.4
309,057 + CSW01_01540 0.27 +1.8
309,057 - CSW01_01540 0.27 -4.1
309,070 - CSW01_01540 0.28 +0.7
309,096 + CSW01_01540 0.30 +1.2
309,096 + CSW01_01540 0.30 -0.5
309,144 - CSW01_01540 0.34 +0.7
309,226 + CSW01_01540 0.41 +1.6
309,231 + CSW01_01540 0.42 +1.9
309,239 - CSW01_01540 0.42 -0.3
309,269 + CSW01_01540 0.45 +1.0
309,269 + CSW01_01540 0.45 +0.4
309,277 - CSW01_01540 0.46 +0.7
309,277 - CSW01_01540 0.46 +0.8
309,300 + CSW01_01540 0.48 +1.0
309,302 - CSW01_01540 0.48 -2.4
309,302 - CSW01_01540 0.48 -0.8
309,304 + CSW01_01540 0.48 +0.7
309,314 + CSW01_01540 0.49 -3.1
309,330 + CSW01_01540 0.50 +0.3
309,338 - CSW01_01540 0.51 -2.5
309,379 + CSW01_01540 0.54 -0.4
309,382 - CSW01_01540 0.54 +2.0
309,399 + CSW01_01540 0.56 -0.4
309,399 + CSW01_01540 0.56 +1.5
309,407 - CSW01_01540 0.57 -3.8
309,407 - CSW01_01540 0.57 +0.5
309,470 + CSW01_01540 0.62 +0.5
309,470 + CSW01_01540 0.62 +0.1
309,470 + CSW01_01540 0.62 -0.5
309,470 + CSW01_01540 0.62 -0.4
309,478 - CSW01_01540 0.62 -0.8
309,478 - CSW01_01540 0.62 +1.0
309,490 + CSW01_01540 0.63 +0.3
309,513 + CSW01_01540 0.65 -0.1
309,513 + CSW01_01540 0.65 +1.0
309,521 - CSW01_01540 0.66 +1.1
309,521 - CSW01_01540 0.66 -3.1
309,526 + CSW01_01540 0.66 +0.1
309,546 + CSW01_01540 0.68 -0.6
309,583 + CSW01_01540 0.71 -3.2
309,583 + CSW01_01540 0.71 -0.4
309,583 + CSW01_01540 0.71 +0.3
309,590 - CSW01_01540 0.72 +1.5
309,607 + CSW01_01540 0.73 -2.2
309,607 + CSW01_01540 0.73 +0.2
309,607 + CSW01_01540 0.73 +0.7
309,615 - CSW01_01540 0.74 -0.2
309,615 - CSW01_01540 0.74 +0.1
309,615 - CSW01_01540 0.74 +0.8

Or see this region's nucleotide sequence