Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01290

Experiment: ICP1_phage_0.23_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01285 and CSW01_01290 overlap by 4 nucleotidesCSW01_01290 and CSW01_01295 overlap by 29 nucleotidesCSW01_01295 and CSW01_01300 overlap by 62 nucleotides CSW01_01285: CSW01_01285 - perosamine synthetase, at 250,456 to 251,559 _01285 CSW01_01290: CSW01_01290 - rfbG protein, at 251,556 to 252,947 _01290 CSW01_01295: CSW01_01295 - ABC transporter permease, at 252,919 to 253,713 _01295 CSW01_01300: CSW01_01300 - sugar ABC transporter, at 253,652 to 254,467 _01300 Position (kb) 251 252 253Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 250.599 kb on + strand, within CSW01_01285at 250.599 kb on + strand, within CSW01_01285at 250.601 kb on + strand, within CSW01_01285at 250.609 kb on - strand, within CSW01_01285at 250.609 kb on - strand, within CSW01_01285at 250.677 kb on + strand, within CSW01_01285at 250.694 kb on + strand, within CSW01_01285at 250.707 kb on + strand, within CSW01_01285at 250.707 kb on + strand, within CSW01_01285at 250.707 kb on + strand, within CSW01_01285at 250.715 kb on + strand, within CSW01_01285at 250.715 kb on + strand, within CSW01_01285at 250.715 kb on + strand, within CSW01_01285at 250.715 kb on - strand, within CSW01_01285at 250.719 kb on + strand, within CSW01_01285at 250.720 kb on + strand, within CSW01_01285at 250.723 kb on - strand, within CSW01_01285at 250.723 kb on - strand, within CSW01_01285at 250.728 kb on - strand, within CSW01_01285at 250.728 kb on - strand, within CSW01_01285at 250.730 kb on - strand, within CSW01_01285at 250.752 kb on + strand, within CSW01_01285at 250.752 kb on + strand, within CSW01_01285at 250.764 kb on + strand, within CSW01_01285at 250.766 kb on + strand, within CSW01_01285at 250.768 kb on + strand, within CSW01_01285at 250.768 kb on + strand, within CSW01_01285at 250.776 kb on - strand, within CSW01_01285at 250.776 kb on - strand, within CSW01_01285at 250.776 kb on - strand, within CSW01_01285at 250.778 kb on + strand, within CSW01_01285at 250.778 kb on + strand, within CSW01_01285at 250.778 kb on + strand, within CSW01_01285at 250.786 kb on - strand, within CSW01_01285at 250.830 kb on - strand, within CSW01_01285at 250.894 kb on - strand, within CSW01_01285at 250.920 kb on + strand, within CSW01_01285at 250.921 kb on + strand, within CSW01_01285at 250.921 kb on + strand, within CSW01_01285at 250.921 kb on - strand, within CSW01_01285at 250.928 kb on + strand, within CSW01_01285at 250.936 kb on - strand, within CSW01_01285at 250.977 kb on - strand, within CSW01_01285at 251.006 kb on + strand, within CSW01_01285at 251.018 kb on - strand, within CSW01_01285at 251.019 kb on - strand, within CSW01_01285at 251.074 kb on + strand, within CSW01_01285at 251.100 kb on + strand, within CSW01_01285at 251.105 kb on + strand, within CSW01_01285at 251.108 kb on - strand, within CSW01_01285at 251.113 kb on - strand, within CSW01_01285at 251.159 kb on + strand, within CSW01_01285at 251.159 kb on + strand, within CSW01_01285at 251.159 kb on + strand, within CSW01_01285at 251.167 kb on - strand, within CSW01_01285at 251.167 kb on - strand, within CSW01_01285at 251.167 kb on - strand, within CSW01_01285at 251.167 kb on - strand, within CSW01_01285at 251.169 kb on + strand, within CSW01_01285at 251.177 kb on - strand, within CSW01_01285at 251.225 kb on + strand, within CSW01_01285at 251.225 kb on + strand, within CSW01_01285at 251.233 kb on - strand, within CSW01_01285at 251.233 kb on - strand, within CSW01_01285at 251.238 kb on - strand, within CSW01_01285at 251.254 kb on + strand, within CSW01_01285at 251.273 kb on - strand, within CSW01_01285at 251.311 kb on + strand, within CSW01_01285at 251.318 kb on + strand, within CSW01_01285at 251.319 kb on - strand, within CSW01_01285at 251.326 kb on - strand, within CSW01_01285at 251.329 kb on + strand, within CSW01_01285at 251.334 kb on - strand, within CSW01_01285at 251.340 kb on + strand, within CSW01_01285at 251.346 kb on - strand, within CSW01_01285at 251.346 kb on - strand, within CSW01_01285at 251.348 kb on - strand, within CSW01_01285at 251.373 kb on + strand, within CSW01_01285at 251.400 kb on + strand, within CSW01_01285at 251.406 kb on + strand, within CSW01_01285at 251.462 kb on - strandat 251.470 kb on + strandat 251.476 kb on + strandat 251.489 kb on + strandat 251.489 kb on + strandat 251.494 kb on + strandat 251.497 kb on - strandat 251.497 kb on - strandat 251.497 kb on - strandat 251.502 kb on - strandat 251.502 kb on - strandat 251.504 kb on - strandat 251.606 kb on - strandat 251.712 kb on + strand, within CSW01_01290at 251.899 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.900 kb on - strand, within CSW01_01290at 251.910 kb on - strand, within CSW01_01290at 251.951 kb on + strand, within CSW01_01290at 251.956 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.980 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.981 kb on + strand, within CSW01_01290at 251.989 kb on - strand, within CSW01_01290at 251.989 kb on - strand, within CSW01_01290at 252.000 kb on + strand, within CSW01_01290at 252.008 kb on - strand, within CSW01_01290at 252.023 kb on + strand, within CSW01_01290at 252.031 kb on - strand, within CSW01_01290at 252.033 kb on + strand, within CSW01_01290at 252.161 kb on + strand, within CSW01_01290at 252.198 kb on - strand, within CSW01_01290at 252.198 kb on - strand, within CSW01_01290at 252.223 kb on - strand, within CSW01_01290at 252.235 kb on - strand, within CSW01_01290at 252.247 kb on + strand, within CSW01_01290at 252.247 kb on + strand, within CSW01_01290at 252.318 kb on + strand, within CSW01_01290at 252.326 kb on - strand, within CSW01_01290at 252.327 kb on - strand, within CSW01_01290at 252.380 kb on - strand, within CSW01_01290at 252.425 kb on + strand, within CSW01_01290at 252.432 kb on + strand, within CSW01_01290at 252.440 kb on - strand, within CSW01_01290at 252.454 kb on - strand, within CSW01_01290at 252.454 kb on - strand, within CSW01_01290at 252.471 kb on + strand, within CSW01_01290at 252.486 kb on - strand, within CSW01_01290at 252.554 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.556 kb on + strand, within CSW01_01290at 252.562 kb on - strand, within CSW01_01290at 252.562 kb on - strand, within CSW01_01290at 252.656 kb on + strand, within CSW01_01290at 252.665 kb on - strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.719 kb on + strand, within CSW01_01290at 252.727 kb on - strand, within CSW01_01290at 252.753 kb on + strand, within CSW01_01290at 252.757 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 253.087 kb on - strand, within CSW01_01295at 253.212 kb on + strand, within CSW01_01295at 253.240 kb on + strand, within CSW01_01295at 253.249 kb on - strand, within CSW01_01295at 253.329 kb on - strand, within CSW01_01295at 253.453 kb on - strand, within CSW01_01295at 253.523 kb on - strand, within CSW01_01295at 253.746 kb on + strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.947 kb on - strand, within CSW01_01300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
remove
250,599 + CSW01_01285 0.13 +4.8
250,599 + CSW01_01285 0.13 +4.7
250,601 + CSW01_01285 0.13 +5.0
250,609 - CSW01_01285 0.14 +5.8
250,609 - CSW01_01285 0.14 +5.0
250,677 + CSW01_01285 0.20 +6.2
250,694 + CSW01_01285 0.22 +5.1
250,707 + CSW01_01285 0.23 +5.7
250,707 + CSW01_01285 0.23 +5.1
250,707 + CSW01_01285 0.23 +5.4
250,715 + CSW01_01285 0.23 +4.3
250,715 + CSW01_01285 0.23 +4.6
250,715 + CSW01_01285 0.23 +5.6
250,715 - CSW01_01285 0.23 +5.6
250,719 + CSW01_01285 0.24 +5.2
250,720 + CSW01_01285 0.24 +5.4
250,723 - CSW01_01285 0.24 +5.0
250,723 - CSW01_01285 0.24 +5.7
250,728 - CSW01_01285 0.25 +4.8
250,728 - CSW01_01285 0.25 +5.3
250,730 - CSW01_01285 0.25 +5.2
250,752 + CSW01_01285 0.27 +4.8
250,752 + CSW01_01285 0.27 +5.3
250,764 + CSW01_01285 0.28 +4.5
250,766 + CSW01_01285 0.28 +5.5
250,768 + CSW01_01285 0.28 +4.6
250,768 + CSW01_01285 0.28 +5.4
250,776 - CSW01_01285 0.29 +5.5
250,776 - CSW01_01285 0.29 +5.2
250,776 - CSW01_01285 0.29 +5.2
250,778 + CSW01_01285 0.29 +5.0
250,778 + CSW01_01285 0.29 +5.1
250,778 + CSW01_01285 0.29 +6.4
250,786 - CSW01_01285 0.30 +4.5
250,830 - CSW01_01285 0.34 +4.5
250,894 - CSW01_01285 0.40 +5.0
250,920 + CSW01_01285 0.42 +5.4
250,921 + CSW01_01285 0.42 +4.8
250,921 + CSW01_01285 0.42 +4.5
250,921 - CSW01_01285 0.42 +5.3
250,928 + CSW01_01285 0.43 +5.6
250,936 - CSW01_01285 0.43 +5.1
250,977 - CSW01_01285 0.47 +4.8
251,006 + CSW01_01285 0.50 +4.7
251,018 - CSW01_01285 0.51 +4.3
251,019 - CSW01_01285 0.51 +4.6
251,074 + CSW01_01285 0.56 +4.9
251,100 + CSW01_01285 0.58 +5.0
251,105 + CSW01_01285 0.59 +5.0
251,108 - CSW01_01285 0.59 +5.4
251,113 - CSW01_01285 0.60 +4.8
251,159 + CSW01_01285 0.64 +5.1
251,159 + CSW01_01285 0.64 +4.3
251,159 + CSW01_01285 0.64 +5.5
251,167 - CSW01_01285 0.64 +5.0
251,167 - CSW01_01285 0.64 +5.3
251,167 - CSW01_01285 0.64 +3.6
251,167 - CSW01_01285 0.64 +5.0
251,169 + CSW01_01285 0.65 +5.1
251,177 - CSW01_01285 0.65 +5.2
251,225 + CSW01_01285 0.70 +6.2
251,225 + CSW01_01285 0.70 +5.4
251,233 - CSW01_01285 0.70 +5.5
251,233 - CSW01_01285 0.70 +5.2
251,238 - CSW01_01285 0.71 +4.4
251,254 + CSW01_01285 0.72 +4.7
251,273 - CSW01_01285 0.74 +4.6
251,311 + CSW01_01285 0.77 +5.2
251,318 + CSW01_01285 0.78 +5.7
251,319 - CSW01_01285 0.78 +5.8
251,326 - CSW01_01285 0.79 +4.7
251,329 + CSW01_01285 0.79 +4.6
251,334 - CSW01_01285 0.80 +5.3
251,340 + CSW01_01285 0.80 +5.1
251,346 - CSW01_01285 0.81 +4.6
251,346 - CSW01_01285 0.81 +5.0
251,348 - CSW01_01285 0.81 +4.7
251,373 + CSW01_01285 0.83 +4.5
251,400 + CSW01_01285 0.86 +4.7
251,406 + CSW01_01285 0.86 +4.6
251,462 - +5.1
251,470 + +5.6
251,476 + +4.8
251,489 + +5.0
251,489 + +5.1
251,494 + +5.0
251,497 - +5.3
251,497 - +4.3
251,497 - +5.0
251,502 - +4.1
251,502 - +4.5
251,504 - +4.5
251,606 - +5.2
251,712 + CSW01_01290 0.11 +5.1
251,899 - CSW01_01290 0.25 +5.6
251,900 - CSW01_01290 0.25 +3.7
251,900 - CSW01_01290 0.25 +4.4
251,900 - CSW01_01290 0.25 +5.5
251,900 - CSW01_01290 0.25 +5.4
251,900 - CSW01_01290 0.25 +4.8
251,900 - CSW01_01290 0.25 +4.8
251,910 - CSW01_01290 0.25 +4.8
251,951 + CSW01_01290 0.28 +4.6
251,956 + CSW01_01290 0.29 +4.8
251,980 + CSW01_01290 0.30 +5.0
251,980 + CSW01_01290 0.30 +5.3
251,980 + CSW01_01290 0.30 +4.9
251,981 + CSW01_01290 0.31 +5.0
251,981 + CSW01_01290 0.31 +4.7
251,981 + CSW01_01290 0.31 +5.7
251,989 - CSW01_01290 0.31 +5.2
251,989 - CSW01_01290 0.31 +4.9
252,000 + CSW01_01290 0.32 +4.8
252,008 - CSW01_01290 0.32 +4.5
252,023 + CSW01_01290 0.34 +5.0
252,031 - CSW01_01290 0.34 +5.3
252,033 + CSW01_01290 0.34 +4.1
252,161 + CSW01_01290 0.43 +5.1
252,198 - CSW01_01290 0.46 +5.0
252,198 - CSW01_01290 0.46 +5.0
252,223 - CSW01_01290 0.48 +5.1
252,235 - CSW01_01290 0.49 +5.2
252,247 + CSW01_01290 0.50 +5.4
252,247 + CSW01_01290 0.50 +5.8
252,318 + CSW01_01290 0.55 +4.3
252,326 - CSW01_01290 0.55 +4.7
252,327 - CSW01_01290 0.55 +4.6
252,380 - CSW01_01290 0.59 +4.8
252,425 + CSW01_01290 0.62 +5.1
252,432 + CSW01_01290 0.63 +5.4
252,440 - CSW01_01290 0.64 +5.0
252,454 - CSW01_01290 0.65 +5.3
252,454 - CSW01_01290 0.65 +4.8
252,471 + CSW01_01290 0.66 +5.5
252,486 - CSW01_01290 0.67 +4.9
252,554 + CSW01_01290 0.72 +5.2
252,556 + CSW01_01290 0.72 +5.0
252,556 + CSW01_01290 0.72 +5.0
252,556 + CSW01_01290 0.72 +4.9
252,556 + CSW01_01290 0.72 +5.0
252,556 + CSW01_01290 0.72 +5.3
252,556 + CSW01_01290 0.72 +4.3
252,556 + CSW01_01290 0.72 +5.3
252,562 - CSW01_01290 0.72 +4.6
252,562 - CSW01_01290 0.72 +4.7
252,656 + CSW01_01290 0.79 +4.6
252,665 - CSW01_01290 0.80 +4.6
252,692 + CSW01_01290 0.82 +5.7
252,692 + CSW01_01290 0.82 +4.8
252,700 - CSW01_01290 0.82 +5.7
252,700 - CSW01_01290 0.82 +4.9
252,700 - CSW01_01290 0.82 +5.5
252,719 + CSW01_01290 0.84 +5.1
252,727 - CSW01_01290 0.84 +5.2
252,753 + CSW01_01290 0.86 +4.9
252,757 - CSW01_01290 0.86 +4.9
252,761 - CSW01_01290 0.87 +4.6
252,761 - CSW01_01290 0.87 +5.1
253,087 - CSW01_01295 0.21 +4.6
253,212 + CSW01_01295 0.37 +4.3
253,240 + CSW01_01295 0.40 +4.6
253,249 - CSW01_01295 0.42 +4.5
253,329 - CSW01_01295 0.52 +4.1
253,453 - CSW01_01295 0.67 +4.2
253,523 - CSW01_01295 0.76 +4.3
253,746 + CSW01_01300 0.12 +4.5
253,754 - CSW01_01300 0.12 +5.1
253,754 - CSW01_01300 0.12 +4.8
253,754 - CSW01_01300 0.12 +5.2
253,754 - CSW01_01300 0.12 +4.7
253,754 - CSW01_01300 0.12 +3.9
253,947 - CSW01_01300 0.36 +4.6

Or see this region's nucleotide sequence