Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00845

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00840 and CSW01_00845 are separated by 126 nucleotidesCSW01_00845 and CSW01_00850 are separated by 115 nucleotides CSW01_00840: CSW01_00840 - ketol-acid reductoisomerase, at 157,442 to 158,926 _00840 CSW01_00845: CSW01_00845 - cytoplasmic protein, at 159,053 to 159,304 _00845 CSW01_00850: CSW01_00850 - multidrug resistance protein, at 159,420 to 162,530 _00850 Position (kb) 159 160Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 158.136 kb on + strand, within CSW01_00840at 158.247 kb on + strand, within CSW01_00840at 158.255 kb on - strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.272 kb on + strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.280 kb on - strand, within CSW01_00840at 158.303 kb on - strand, within CSW01_00840at 158.303 kb on - strand, within CSW01_00840at 158.305 kb on + strand, within CSW01_00840at 158.314 kb on + strand, within CSW01_00840at 158.382 kb on - strand, within CSW01_00840at 158.587 kb on - strand, within CSW01_00840at 158.693 kb on + strand, within CSW01_00840at 158.729 kb on + strand, within CSW01_00840at 158.745 kb on + strand, within CSW01_00840at 158.791 kb on - strandat 158.871 kb on + strandat 158.871 kb on + strandat 158.899 kb on + strandat 158.913 kb on - strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.954 kb on + strandat 158.983 kb on + strandat 158.985 kb on - strandat 159.025 kb on - strandat 159.025 kb on - strandat 159.054 kb on + strandat 159.057 kb on - strandat 159.417 kb on + strandat 159.439 kb on + strandat 159.446 kb on - strandat 159.475 kb on + strandat 159.606 kb on + strandat 159.619 kb on - strandat 159.639 kb on - strandat 159.648 kb on - strandat 159.675 kb on + strandat 159.675 kb on + strandat 159.698 kb on + strandat 159.698 kb on + strandat 159.706 kb on - strandat 159.718 kb on + strandat 159.732 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.850 kb on + strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.858 kb on - strand, within CSW01_00850at 159.887 kb on + strand, within CSW01_00850at 160.024 kb on + strand, within CSW01_00850at 160.046 kb on - strand, within CSW01_00850at 160.046 kb on - strand, within CSW01_00850at 160.053 kb on - strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.095 kb on + strand, within CSW01_00850at 160.097 kb on + strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.103 kb on - strand, within CSW01_00850at 160.146 kb on - strand, within CSW01_00850at 160.146 kb on - strand, within CSW01_00850at 160.156 kb on - strand, within CSW01_00850at 160.161 kb on - strand, within CSW01_00850at 160.216 kb on + strand, within CSW01_00850at 160.298 kb on + strand, within CSW01_00850

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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158,136 + CSW01_00840 0.47 -0.5
158,247 + CSW01_00840 0.54 +0.2
158,255 - CSW01_00840 0.55 -0.3
158,272 + CSW01_00840 0.56 +0.2
158,272 + CSW01_00840 0.56 -0.2
158,272 + CSW01_00840 0.56 +1.1
158,272 + CSW01_00840 0.56 +1.4
158,280 - CSW01_00840 0.56 +1.1
158,280 - CSW01_00840 0.56 -2.2
158,280 - CSW01_00840 0.56 -1.1
158,303 - CSW01_00840 0.58 +0.9
158,303 - CSW01_00840 0.58 -3.0
158,305 + CSW01_00840 0.58 +2.8
158,314 + CSW01_00840 0.59 +0.8
158,382 - CSW01_00840 0.63 +0.0
158,587 - CSW01_00840 0.77 -5.1
158,693 + CSW01_00840 0.84 -0.9
158,729 + CSW01_00840 0.87 +0.1
158,745 + CSW01_00840 0.88 +0.3
158,791 - -2.5
158,871 + +0.9
158,871 + -0.7
158,899 + +1.6
158,913 - +0.8
158,954 + -2.6
158,954 + +0.8
158,954 + -3.1
158,983 + +0.9
158,985 - +0.4
159,025 - +0.6
159,025 - -4.0
159,054 + -0.8
159,057 - +1.0
159,417 + +0.3
159,439 + +0.3
159,446 - +0.5
159,475 + +1.3
159,606 + +0.4
159,619 - -2.1
159,639 - +1.5
159,648 - -0.8
159,675 + -3.0
159,675 + -0.2
159,698 + -3.1
159,698 + -0.6
159,706 - -0.4
159,718 + -1.7
159,732 + CSW01_00850 0.10 +0.9
159,850 + CSW01_00850 0.14 +0.2
159,850 + CSW01_00850 0.14 +0.4
159,850 + CSW01_00850 0.14 -1.8
159,850 + CSW01_00850 0.14 +2.0
159,850 + CSW01_00850 0.14 +0.5
159,850 + CSW01_00850 0.14 -0.5
159,858 - CSW01_00850 0.14 +0.9
159,858 - CSW01_00850 0.14 +0.1
159,858 - CSW01_00850 0.14 +0.3
159,858 - CSW01_00850 0.14 -2.4
159,858 - CSW01_00850 0.14 -0.8
159,887 + CSW01_00850 0.15 -1.5
160,024 + CSW01_00850 0.19 +1.3
160,046 - CSW01_00850 0.20 +0.6
160,046 - CSW01_00850 0.20 +0.3
160,053 - CSW01_00850 0.20 -0.4
160,095 + CSW01_00850 0.22 -2.4
160,095 + CSW01_00850 0.22 -3.0
160,095 + CSW01_00850 0.22 +0.6
160,097 + CSW01_00850 0.22 +1.0
160,103 - CSW01_00850 0.22 +0.3
160,103 - CSW01_00850 0.22 +0.9
160,103 - CSW01_00850 0.22 -1.9
160,146 - CSW01_00850 0.23 +1.2
160,146 - CSW01_00850 0.23 +0.3
160,156 - CSW01_00850 0.24 +1.0
160,161 - CSW01_00850 0.24 -0.5
160,216 + CSW01_00850 0.26 -1.5
160,298 + CSW01_00850 0.28 -0.2

Or see this region's nucleotide sequence