Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00600

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00595 and CSW01_00600 overlap by 4 nucleotidesCSW01_00600 and CSW01_00605 overlap by 17 nucleotidesCSW01_00605 and CSW01_00610 are separated by 45 nucleotides CSW01_00595: CSW01_00595 - heme biosynthesis protein HemY, at 111,558 to 112,754 _00595 CSW01_00600: CSW01_00600 - heme biosynthesis operon protein HemX, at 112,751 to 113,950 _00600 CSW01_00605: CSW01_00605 - uroporphyrinogen-III synthase, at 113,934 to 114,716 _00605 CSW01_00610: CSW01_00610 - hydroxymethylbilane synthase, at 114,762 to 115,715 _00610 Position (kb) 112 113 114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 111.768 kb on - strand, within CSW01_00595at 111.856 kb on + strand, within CSW01_00595at 111.864 kb on - strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.866 kb on + strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.874 kb on - strand, within CSW01_00595at 111.907 kb on + strand, within CSW01_00595at 111.913 kb on + strand, within CSW01_00595at 111.915 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 111.925 kb on + strand, within CSW01_00595at 112.000 kb on + strand, within CSW01_00595at 112.036 kb on - strand, within CSW01_00595at 112.088 kb on + strand, within CSW01_00595at 112.098 kb on + strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.119 kb on - strand, within CSW01_00595at 112.134 kb on + strand, within CSW01_00595at 112.137 kb on + strand, within CSW01_00595at 112.138 kb on - strand, within CSW01_00595at 112.142 kb on - strand, within CSW01_00595at 112.171 kb on - strand, within CSW01_00595at 112.173 kb on - strand, within CSW01_00595at 112.193 kb on - strand, within CSW01_00595at 112.203 kb on - strand, within CSW01_00595at 112.220 kb on + strand, within CSW01_00595at 112.227 kb on + strand, within CSW01_00595at 112.250 kb on + strand, within CSW01_00595at 112.328 kb on + strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.336 kb on - strand, within CSW01_00595at 112.360 kb on + strand, within CSW01_00595at 112.401 kb on - strand, within CSW01_00595at 112.462 kb on + strand, within CSW01_00595at 112.470 kb on - strand, within CSW01_00595at 112.514 kb on + strand, within CSW01_00595at 112.522 kb on - strand, within CSW01_00595at 112.522 kb on - strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.523 kb on + strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.531 kb on - strand, within CSW01_00595at 112.577 kb on + strand, within CSW01_00595at 112.648 kb on - strandat 112.670 kb on + strandat 112.693 kb on - strandat 112.720 kb on - strandat 112.764 kb on + strandat 112.790 kb on + strandat 112.820 kb on + strandat 112.820 kb on + strandat 112.820 kb on + strandat 112.845 kb on + strandat 112.847 kb on + strandat 112.847 kb on + strandat 112.880 kb on + strand, within CSW01_00600at 112.880 kb on + strand, within CSW01_00600at 112.888 kb on - strand, within CSW01_00600at 112.898 kb on + strand, within CSW01_00600at 112.899 kb on - strand, within CSW01_00600at 112.899 kb on - strand, within CSW01_00600at 112.933 kb on + strand, within CSW01_00600at 112.933 kb on + strand, within CSW01_00600at 112.935 kb on + strand, within CSW01_00600at 112.943 kb on - strand, within CSW01_00600at 112.958 kb on - strand, within CSW01_00600at 112.963 kb on - strand, within CSW01_00600at 112.969 kb on + strand, within CSW01_00600at 112.989 kb on + strand, within CSW01_00600at 112.989 kb on + strand, within CSW01_00600at 112.997 kb on - strand, within CSW01_00600at 112.999 kb on - strand, within CSW01_00600at 113.006 kb on - strand, within CSW01_00600at 113.024 kb on - strand, within CSW01_00600at 113.024 kb on - strand, within CSW01_00600at 113.053 kb on + strand, within CSW01_00600at 113.053 kb on + strand, within CSW01_00600at 113.055 kb on + strand, within CSW01_00600at 113.063 kb on - strand, within CSW01_00600at 113.070 kb on - strand, within CSW01_00600at 113.108 kb on - strand, within CSW01_00600at 113.211 kb on + strand, within CSW01_00600at 113.211 kb on + strand, within CSW01_00600at 113.224 kb on - strand, within CSW01_00600at 113.237 kb on - strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.263 kb on + strand, within CSW01_00600at 113.266 kb on - strand, within CSW01_00600at 113.266 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.271 kb on - strand, within CSW01_00600at 113.310 kb on - strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.325 kb on + strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.333 kb on - strand, within CSW01_00600at 113.352 kb on - strand, within CSW01_00600at 113.359 kb on + strand, within CSW01_00600at 113.364 kb on + strand, within CSW01_00600at 113.364 kb on + strand, within CSW01_00600at 113.374 kb on + strand, within CSW01_00600at 113.374 kb on + strand, within CSW01_00600at 113.583 kb on - strand, within CSW01_00600at 113.640 kb on - strand, within CSW01_00600at 113.651 kb on - strand, within CSW01_00600at 113.664 kb on + strand, within CSW01_00600at 113.664 kb on + strand, within CSW01_00600at 113.672 kb on - strand, within CSW01_00600at 113.672 kb on - strand, within CSW01_00600at 113.711 kb on + strand, within CSW01_00600at 113.711 kb on + strand, within CSW01_00600at 113.719 kb on - strand, within CSW01_00600at 113.719 kb on - strand, within CSW01_00600at 113.746 kb on + strand, within CSW01_00600at 113.795 kb on + strand, within CSW01_00600at 113.803 kb on - strand, within CSW01_00600at 113.803 kb on - strand, within CSW01_00600at 113.803 kb on - strand, within CSW01_00600at 113.803 kb on - strand, within CSW01_00600at 113.813 kb on + strand, within CSW01_00600at 113.813 kb on + strand, within CSW01_00600at 113.813 kb on + strand, within CSW01_00600at 113.821 kb on - strand, within CSW01_00600at 113.821 kb on - strand, within CSW01_00600at 113.850 kb on + strandat 113.858 kb on - strandat 113.858 kb on - strandat 113.860 kb on - strandat 113.887 kb on + strandat 113.910 kb on - strandat 113.952 kb on + strandat 113.952 kb on + strandat 113.965 kb on - strandat 113.987 kb on - strandat 114.697 kb on + strandat 114.714 kb on - strandat 114.734 kb on + strandat 114.755 kb on - strandat 114.755 kb on - strandat 114.755 kb on - strandat 114.755 kb on - strandat 114.761 kb on - strandat 114.783 kb on - strandat 114.783 kb on - strandat 114.783 kb on - strandat 114.783 kb on - strandat 114.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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111,768 - CSW01_00595 0.18 -1.1
111,856 + CSW01_00595 0.25 -2.9
111,864 - CSW01_00595 0.26 -0.0
111,866 + CSW01_00595 0.26 -0.4
111,866 + CSW01_00595 0.26 -2.8
111,866 + CSW01_00595 0.26 -1.8
111,866 + CSW01_00595 0.26 +1.0
111,874 - CSW01_00595 0.26 -1.5
111,874 - CSW01_00595 0.26 -2.7
111,874 - CSW01_00595 0.26 -0.1
111,874 - CSW01_00595 0.26 -3.2
111,874 - CSW01_00595 0.26 -2.0
111,874 - CSW01_00595 0.26 -3.5
111,874 - CSW01_00595 0.26 +1.2
111,874 - CSW01_00595 0.26 +0.2
111,907 + CSW01_00595 0.29 -0.7
111,913 + CSW01_00595 0.30 +1.9
111,915 + CSW01_00595 0.30 -0.6
111,925 + CSW01_00595 0.31 +1.3
111,925 + CSW01_00595 0.31 -0.8
112,000 + CSW01_00595 0.37 -1.2
112,036 - CSW01_00595 0.40 -1.4
112,088 + CSW01_00595 0.44 -3.8
112,098 + CSW01_00595 0.45 -2.9
112,119 - CSW01_00595 0.47 +0.3
112,119 - CSW01_00595 0.47 -1.4
112,134 + CSW01_00595 0.48 -2.6
112,137 + CSW01_00595 0.48 -1.1
112,138 - CSW01_00595 0.48 +0.6
112,142 - CSW01_00595 0.49 +1.1
112,171 - CSW01_00595 0.51 +1.3
112,173 - CSW01_00595 0.51 -0.6
112,193 - CSW01_00595 0.53 -4.1
112,203 - CSW01_00595 0.54 +0.1
112,220 + CSW01_00595 0.55 -3.4
112,227 + CSW01_00595 0.56 -0.7
112,250 + CSW01_00595 0.58 -4.4
112,328 + CSW01_00595 0.64 +0.4
112,336 - CSW01_00595 0.65 +0.2
112,336 - CSW01_00595 0.65 +0.5
112,360 + CSW01_00595 0.67 -2.0
112,401 - CSW01_00595 0.70 -0.2
112,462 + CSW01_00595 0.76 -0.3
112,470 - CSW01_00595 0.76 -1.1
112,514 + CSW01_00595 0.80 +1.0
112,522 - CSW01_00595 0.81 +0.6
112,522 - CSW01_00595 0.81 +0.9
112,523 + CSW01_00595 0.81 +1.5
112,523 + CSW01_00595 0.81 +0.5
112,523 + CSW01_00595 0.81 -1.4
112,523 + CSW01_00595 0.81 -0.1
112,523 + CSW01_00595 0.81 -3.6
112,523 + CSW01_00595 0.81 -3.7
112,531 - CSW01_00595 0.81 +0.9
112,531 - CSW01_00595 0.81 +0.1
112,531 - CSW01_00595 0.81 +1.2
112,531 - CSW01_00595 0.81 -0.8
112,531 - CSW01_00595 0.81 -3.3
112,531 - CSW01_00595 0.81 +1.6
112,577 + CSW01_00595 0.85 -2.9
112,648 - +1.2
112,670 + -0.2
112,693 - +0.3
112,720 - -1.3
112,764 + +1.0
112,790 + -0.6
112,820 + -2.0
112,820 + -2.7
112,820 + +1.2
112,845 + -0.5
112,847 + -0.2
112,847 + -2.6
112,880 + CSW01_00600 0.11 -0.1
112,880 + CSW01_00600 0.11 -3.4
112,888 - CSW01_00600 0.11 -1.8
112,898 + CSW01_00600 0.12 -1.7
112,899 - CSW01_00600 0.12 +2.0
112,899 - CSW01_00600 0.12 -1.5
112,933 + CSW01_00600 0.15 -1.5
112,933 + CSW01_00600 0.15 -1.4
112,935 + CSW01_00600 0.15 -2.5
112,943 - CSW01_00600 0.16 -2.7
112,958 - CSW01_00600 0.17 +0.2
112,963 - CSW01_00600 0.18 +0.5
112,969 + CSW01_00600 0.18 +1.1
112,989 + CSW01_00600 0.20 -3.1
112,989 + CSW01_00600 0.20 -0.7
112,997 - CSW01_00600 0.20 -2.9
112,999 - CSW01_00600 0.21 +0.8
113,006 - CSW01_00600 0.21 -4.7
113,024 - CSW01_00600 0.23 -3.9
113,024 - CSW01_00600 0.23 -0.4
113,053 + CSW01_00600 0.25 -0.6
113,053 + CSW01_00600 0.25 -2.2
113,055 + CSW01_00600 0.25 -2.9
113,063 - CSW01_00600 0.26 -0.7
113,070 - CSW01_00600 0.27 -1.2
113,108 - CSW01_00600 0.30 -4.4
113,211 + CSW01_00600 0.38 -1.5
113,211 + CSW01_00600 0.38 -1.9
113,224 - CSW01_00600 0.39 -3.4
113,237 - CSW01_00600 0.41 +2.2
113,263 + CSW01_00600 0.43 -1.9
113,263 + CSW01_00600 0.43 -1.5
113,263 + CSW01_00600 0.43 +2.4
113,263 + CSW01_00600 0.43 +1.4
113,263 + CSW01_00600 0.43 -1.2
113,263 + CSW01_00600 0.43 -0.4
113,266 - CSW01_00600 0.43 -1.5
113,266 - CSW01_00600 0.43 -2.9
113,271 - CSW01_00600 0.43 -0.1
113,271 - CSW01_00600 0.43 -1.5
113,271 - CSW01_00600 0.43 -0.3
113,310 - CSW01_00600 0.47 +2.1
113,325 + CSW01_00600 0.48 -4.5
113,325 + CSW01_00600 0.48 -0.9
113,325 + CSW01_00600 0.48 -0.3
113,333 - CSW01_00600 0.48 -2.9
113,333 - CSW01_00600 0.48 -2.5
113,333 - CSW01_00600 0.48 -3.6
113,352 - CSW01_00600 0.50 -0.2
113,359 + CSW01_00600 0.51 -2.7
113,364 + CSW01_00600 0.51 -3.1
113,364 + CSW01_00600 0.51 +1.9
113,374 + CSW01_00600 0.52 -0.8
113,374 + CSW01_00600 0.52 +1.2
113,583 - CSW01_00600 0.69 +1.6
113,640 - CSW01_00600 0.74 +0.4
113,651 - CSW01_00600 0.75 -2.5
113,664 + CSW01_00600 0.76 -4.0
113,664 + CSW01_00600 0.76 +0.9
113,672 - CSW01_00600 0.77 -3.3
113,672 - CSW01_00600 0.77 -2.5
113,711 + CSW01_00600 0.80 -4.5
113,711 + CSW01_00600 0.80 -1.8
113,719 - CSW01_00600 0.81 +0.3
113,719 - CSW01_00600 0.81 -1.5
113,746 + CSW01_00600 0.83 -2.9
113,795 + CSW01_00600 0.87 +1.2
113,803 - CSW01_00600 0.88 +0.5
113,803 - CSW01_00600 0.88 -0.1
113,803 - CSW01_00600 0.88 -0.6
113,803 - CSW01_00600 0.88 -0.2
113,813 + CSW01_00600 0.89 -1.8
113,813 + CSW01_00600 0.89 -1.0
113,813 + CSW01_00600 0.89 -0.1
113,821 - CSW01_00600 0.89 -1.3
113,821 - CSW01_00600 0.89 -0.7
113,850 + -0.1
113,858 - -0.0
113,858 - +1.0
113,860 - +0.3
113,887 + -0.9
113,910 - +1.1
113,952 + +1.4
113,952 + -1.7
113,965 - -0.4
113,987 - +0.2
114,697 + +0.5
114,714 - +2.0
114,734 + +0.9
114,755 - -3.3
114,755 - -0.1
114,755 - -0.2
114,755 - +0.6
114,761 - -1.4
114,783 - +2.2
114,783 - +0.5
114,783 - -0.2
114,783 - -0.3
114,783 - +0.1

Or see this region's nucleotide sequence