Experiment: ICP1_phage_0.23_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00505 and CSW01_00510 are separated by 0 nucleotides CSW01_00510 and CSW01_00515 are separated by 22 nucleotides CSW01_00515 and CSW01_00520 are separated by 70 nucleotides CSW01_00520 and CSW01_00525 are separated by 119 nucleotides
CSW01_00505: CSW01_00505 - 4-hydroxybenzoate octaprenyltransferase, at 93,465 to 94,319
_00505
CSW01_00510: CSW01_00510 - chorismate lyase, at 94,320 to 94,871
_00510
CSW01_00515: CSW01_00515 - hypothetical protein, at 94,894 to 94,992
_00515
CSW01_00520: CSW01_00520 - flagellar basal body-associated protein FliL, at 95,063 to 95,473
_00520
CSW01_00525: CSW01_00525 - methyl-accepting chemotaxis protein, at 95,593 to 97,572
_00525
Position (kb) 94
95 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 94.325 kb on - strand at 94.336 kb on + strand at 94.339 kb on - strand at 94.389 kb on - strand, within CSW01_00510 at 94.413 kb on + strand, within CSW01_00510 at 94.413 kb on + strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.421 kb on - strand, within CSW01_00510 at 94.435 kb on + strand, within CSW01_00510 at 94.471 kb on + strand, within CSW01_00510 at 94.488 kb on - strand, within CSW01_00510 at 94.498 kb on - strand, within CSW01_00510 at 94.567 kb on - strand, within CSW01_00510 at 94.568 kb on - strand, within CSW01_00510 at 94.568 kb on - strand, within CSW01_00510 at 94.614 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.628 kb on + strand, within CSW01_00510 at 94.631 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.636 kb on - strand, within CSW01_00510 at 94.659 kb on + strand, within CSW01_00510 at 94.674 kb on - strand, within CSW01_00510 at 94.720 kb on - strand, within CSW01_00510 at 94.767 kb on - strand, within CSW01_00510 at 94.821 kb on + strand at 94.829 kb on - strand at 94.839 kb on - strand at 94.891 kb on + strand at 94.960 kb on - strand, within CSW01_00515 at 95.071 kb on + strand at 95.212 kb on + strand, within CSW01_00520 at 95.249 kb on - strand, within CSW01_00520 at 95.267 kb on - strand, within CSW01_00520 at 95.292 kb on - strand, within CSW01_00520 at 95.292 kb on - strand, within CSW01_00520 at 95.310 kb on + strand, within CSW01_00520 at 95.395 kb on + strand, within CSW01_00520 at 95.427 kb on - strand, within CSW01_00520 at 95.427 kb on - strand, within CSW01_00520 at 95.432 kb on - strand, within CSW01_00520 at 95.481 kb on + strand at 95.481 kb on + strand at 95.489 kb on - strand at 95.546 kb on - strand at 95.588 kb on - strand at 95.628 kb on + strand at 95.643 kb on - strand at 95.643 kb on - strand at 95.661 kb on - strand at 95.751 kb on + strand at 95.759 kb on - strand at 95.761 kb on - strand at 95.762 kb on + strand at 95.762 kb on + strand at 95.770 kb on - strand at 95.770 kb on - strand at 95.801 kb on + strand, within CSW01_00525 at 95.809 kb on - strand, within CSW01_00525 at 95.815 kb on + strand, within CSW01_00525 at 95.816 kb on + strand, within CSW01_00525 at 95.911 kb on - strand, within CSW01_00525 at 95.978 kb on + strand, within CSW01_00525 at 95.991 kb on + strand, within CSW01_00525
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2 remove 94,325 - -0.7 94,336 + -0.6 94,339 - -1.5 94,389 - CSW01_00510 0.12 -0.5 94,413 + CSW01_00510 0.17 -1.9 94,413 + CSW01_00510 0.17 -3.8 94,421 - CSW01_00510 0.18 -1.7 94,421 - CSW01_00510 0.18 +2.7 94,421 - CSW01_00510 0.18 +1.5 94,435 + CSW01_00510 0.21 -2.0 94,471 + CSW01_00510 0.27 -0.9 94,488 - CSW01_00510 0.30 +0.3 94,498 - CSW01_00510 0.32 +0.3 94,567 - CSW01_00510 0.45 -0.7 94,568 - CSW01_00510 0.45 +0.3 94,568 - CSW01_00510 0.45 +0.0 94,614 + CSW01_00510 0.53 -1.2 94,628 + CSW01_00510 0.56 -0.7 94,628 + CSW01_00510 0.56 +0.8 94,628 + CSW01_00510 0.56 -0.5 94,628 + CSW01_00510 0.56 -0.0 94,631 - CSW01_00510 0.56 -0.5 94,636 - CSW01_00510 0.57 -1.8 94,636 - CSW01_00510 0.57 -0.4 94,636 - CSW01_00510 0.57 -0.3 94,636 - CSW01_00510 0.57 +0.8 94,636 - CSW01_00510 0.57 +1.1 94,636 - CSW01_00510 0.57 -0.4 94,659 + CSW01_00510 0.61 +0.3 94,674 - CSW01_00510 0.64 -0.3 94,720 - CSW01_00510 0.72 -2.9 94,767 - CSW01_00510 0.81 -0.9 94,821 + -1.3 94,829 - +0.7 94,839 - -1.8 94,891 + +0.9 94,960 - CSW01_00515 0.67 +1.3 95,071 + -2.3 95,212 + CSW01_00520 0.36 -0.3 95,249 - CSW01_00520 0.45 +1.4 95,267 - CSW01_00520 0.50 +0.8 95,292 - CSW01_00520 0.56 -0.9 95,292 - CSW01_00520 0.56 +1.4 95,310 + CSW01_00520 0.60 +0.5 95,395 + CSW01_00520 0.81 -1.5 95,427 - CSW01_00520 0.89 +1.8 95,427 - CSW01_00520 0.89 -0.2 95,432 - CSW01_00520 0.90 +0.6 95,481 + +0.5 95,481 + -0.6 95,489 - +0.0 95,546 - +0.6 95,588 - +0.6 95,628 + +0.4 95,643 - -1.5 95,643 - +0.2 95,661 - -3.4 95,751 + +0.9 95,759 - -3.5 95,761 - +1.6 95,762 + -3.0 95,762 + -0.1 95,770 - -0.5 95,770 - -0.6 95,801 + CSW01_00525 0.11 +0.6 95,809 - CSW01_00525 0.11 -0.4 95,815 + CSW01_00525 0.11 +0.6 95,816 + CSW01_00525 0.11 +0.3 95,911 - CSW01_00525 0.16 -3.0 95,978 + CSW01_00525 0.19 +1.1 95,991 + CSW01_00525 0.20 -4.4
Or see this region's nucleotide sequence