Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00405

Experiment: ICP1_phage_0.23_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00395 and CSW01_00400 are separated by 117 nucleotidesCSW01_00400 and CSW01_00405 are separated by 95 nucleotidesCSW01_00405 and CSW01_00410 are separated by 56 nucleotidesCSW01_00410 and CSW01_00415 are separated by 45 nucleotidesCSW01_00415 and CSW01_00420 are separated by 23 nucleotides CSW01_00395: CSW01_00395 - ribosomal RNA small subunit methyltransferase J, at 73,879 to 74,664 _00395 CSW01_00400: CSW01_00400 - hypothetical protein, at 74,782 to 75,171 _00400 CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154 _00405 CSW01_00410: CSW01_00410 - universal stress protein UspA, at 76,211 to 76,636 _00410 CSW01_00415: CSW01_00415 - hypothetical protein, at 76,682 to 76,777 _00415 CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328 _00420 Position (kb) 75 76 77Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 74.297 kb on + strand, within CSW01_00395at 74.299 kb on + strand, within CSW01_00395at 74.324 kb on - strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.350 kb on - strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.407 kb on - strand, within CSW01_00395at 74.411 kb on + strand, within CSW01_00395at 74.481 kb on + strand, within CSW01_00395at 74.488 kb on + strand, within CSW01_00395at 74.499 kb on + strand, within CSW01_00395at 74.501 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.549 kb on + strand, within CSW01_00395at 74.684 kb on + strandat 74.692 kb on + strandat 74.790 kb on + strandat 74.791 kb on + strandat 74.848 kb on - strand, within CSW01_00400at 74.939 kb on + strand, within CSW01_00400at 74.980 kb on + strand, within CSW01_00400at 75.130 kb on + strand, within CSW01_00400at 75.144 kb on + strandat 75.144 kb on - strandat 75.144 kb on - strandat 75.154 kb on + strandat 75.154 kb on + strandat 75.193 kb on - strandat 75.199 kb on - strandat 75.270 kb on + strandat 75.278 kb on - strandat 75.295 kb on - strandat 75.417 kb on + strand, within CSW01_00405at 75.447 kb on + strand, within CSW01_00405at 75.465 kb on + strand, within CSW01_00405at 75.478 kb on + strand, within CSW01_00405at 75.486 kb on - strand, within CSW01_00405at 75.501 kb on - strand, within CSW01_00405at 75.511 kb on - strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.521 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.540 kb on + strand, within CSW01_00405at 75.545 kb on + strand, within CSW01_00405at 75.593 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.661 kb on - strand, within CSW01_00405at 75.698 kb on - strand, within CSW01_00405at 75.706 kb on + strand, within CSW01_00405at 75.713 kb on + strand, within CSW01_00405at 75.750 kb on + strand, within CSW01_00405at 75.786 kb on + strand, within CSW01_00405at 75.787 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.894 kb on + strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.904 kb on + strand, within CSW01_00405at 75.937 kb on + strand, within CSW01_00405at 75.951 kb on + strand, within CSW01_00405at 75.953 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.037 kb on - strand, within CSW01_00405at 76.046 kb on - strand, within CSW01_00405at 76.085 kb on - strandat 76.099 kb on - strandat 76.099 kb on - strandat 76.128 kb on - strandat 76.147 kb on - strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.172 kb on + strandat 76.187 kb on + strandat 76.261 kb on - strand, within CSW01_00410at 76.261 kb on - strand, within CSW01_00410at 76.267 kb on + strand, within CSW01_00410at 76.272 kb on + strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.316 kb on - strand, within CSW01_00410at 76.344 kb on + strand, within CSW01_00410at 76.362 kb on - strand, within CSW01_00410at 76.385 kb on + strand, within CSW01_00410at 76.410 kb on - strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.494 kb on + strand, within CSW01_00410at 76.496 kb on + strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.506 kb on + strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.511 kb on + strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.523 kb on - strand, within CSW01_00410at 76.559 kb on - strand, within CSW01_00410at 76.592 kb on - strand, within CSW01_00410at 76.600 kb on - strandat 76.603 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.667 kb on - strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.680 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.724 kb on + strand, within CSW01_00415at 76.724 kb on + strand, within CSW01_00415at 76.756 kb on + strand, within CSW01_00415at 76.897 kb on + strand, within CSW01_00420at 76.923 kb on - strand, within CSW01_00420at 76.931 kb on - strand, within CSW01_00420at 76.976 kb on - strand, within CSW01_00420at 77.006 kb on + strand, within CSW01_00420at 77.049 kb on + strand, within CSW01_00420at 77.129 kb on + strand, within CSW01_00420at 77.130 kb on - strand, within CSW01_00420at 77.137 kb on - strand, within CSW01_00420at 77.146 kb on + strand, within CSW01_00420

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep2
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74,297 + CSW01_00395 0.53 -1.7
74,299 + CSW01_00395 0.53 -1.0
74,324 - CSW01_00395 0.57 -1.8
74,333 + CSW01_00395 0.58 -0.3
74,333 + CSW01_00395 0.58 +1.1
74,333 + CSW01_00395 0.58 -1.5
74,333 + CSW01_00395 0.58 +0.1
74,333 + CSW01_00395 0.58 -1.2
74,333 + CSW01_00395 0.58 +1.1
74,341 - CSW01_00395 0.59 +1.6
74,341 - CSW01_00395 0.59 +1.5
74,341 - CSW01_00395 0.59 -0.7
74,350 - CSW01_00395 0.60 +0.3
74,394 + CSW01_00395 0.66 -1.6
74,394 + CSW01_00395 0.66 +0.5
74,394 + CSW01_00395 0.66 -0.6
74,402 - CSW01_00395 0.67 +0.3
74,402 - CSW01_00395 0.67 -2.4
74,407 - CSW01_00395 0.67 +1.7
74,411 + CSW01_00395 0.68 +0.0
74,481 + CSW01_00395 0.77 -1.7
74,488 + CSW01_00395 0.77 +0.7
74,499 + CSW01_00395 0.79 +1.7
74,501 + CSW01_00395 0.79 -2.2
74,511 + CSW01_00395 0.80 -2.5
74,511 + CSW01_00395 0.80 -1.2
74,511 + CSW01_00395 0.80 +0.8
74,511 + CSW01_00395 0.80 -0.2
74,519 - CSW01_00395 0.81 +0.1
74,519 - CSW01_00395 0.81 -0.7
74,549 + CSW01_00395 0.85 +0.2
74,684 + -0.4
74,692 + +0.2
74,790 + +1.7
74,791 + +0.9
74,848 - CSW01_00400 0.17 -1.9
74,939 + CSW01_00400 0.40 -1.5
74,980 + CSW01_00400 0.51 +1.1
75,130 + CSW01_00400 0.89 +1.0
75,144 + +0.3
75,144 - -1.7
75,144 - +0.0
75,154 + +0.7
75,154 + -1.1
75,193 - -3.1
75,199 - -3.8
75,270 + -0.4
75,278 - +0.1
75,295 - -3.8
75,417 + CSW01_00405 0.17 -3.9
75,447 + CSW01_00405 0.20 -2.9
75,465 + CSW01_00405 0.22 -1.2
75,478 + CSW01_00405 0.24 +0.7
75,486 - CSW01_00405 0.25 +0.2
75,501 - CSW01_00405 0.26 -1.9
75,511 - CSW01_00405 0.27 +0.5
75,518 + CSW01_00405 0.28 -2.2
75,518 + CSW01_00405 0.28 +3.0
75,518 + CSW01_00405 0.28 -4.2
75,521 - CSW01_00405 0.29 -2.9
75,526 - CSW01_00405 0.29 -2.6
75,526 - CSW01_00405 0.29 -3.4
75,526 - CSW01_00405 0.29 -0.6
75,526 - CSW01_00405 0.29 +0.0
75,526 - CSW01_00405 0.29 -0.2
75,526 - CSW01_00405 0.29 +0.1
75,540 + CSW01_00405 0.31 +0.4
75,545 + CSW01_00405 0.31 +0.1
75,593 - CSW01_00405 0.37 -3.7
75,650 - CSW01_00405 0.43 -1.0
75,650 - CSW01_00405 0.43 +0.7
75,661 - CSW01_00405 0.44 -3.0
75,698 - CSW01_00405 0.49 +0.0
75,706 + CSW01_00405 0.49 -0.8
75,713 + CSW01_00405 0.50 +0.1
75,750 + CSW01_00405 0.54 +1.3
75,786 + CSW01_00405 0.58 +0.7
75,787 - CSW01_00405 0.59 -1.4
75,792 - CSW01_00405 0.59 -0.3
75,792 - CSW01_00405 0.59 +1.5
75,888 + CSW01_00405 0.70 -0.1
75,888 + CSW01_00405 0.70 -1.5
75,888 + CSW01_00405 0.70 +0.8
75,888 + CSW01_00405 0.70 +0.9
75,888 + CSW01_00405 0.70 -0.1
75,894 + CSW01_00405 0.71 -3.3
75,896 - CSW01_00405 0.71 -0.2
75,896 - CSW01_00405 0.71 +0.3
75,904 + CSW01_00405 0.72 -1.7
75,937 + CSW01_00405 0.75 +0.1
75,951 + CSW01_00405 0.77 -2.9
75,953 + CSW01_00405 0.77 +0.5
75,996 + CSW01_00405 0.82 -4.2
75,996 + CSW01_00405 0.82 +0.5
76,004 - CSW01_00405 0.83 +1.4
76,004 - CSW01_00405 0.83 -3.0
76,004 - CSW01_00405 0.83 +1.2
76,004 - CSW01_00405 0.83 -3.7
76,037 - CSW01_00405 0.87 +0.2
76,046 - CSW01_00405 0.88 -2.5
76,085 - -0.7
76,099 - +0.7
76,099 - +2.1
76,128 - +1.8
76,147 - -0.2
76,151 + -4.1
76,151 + -1.0
76,151 + +0.1
76,172 + +0.7
76,187 + -0.5
76,261 - CSW01_00410 0.12 -2.2
76,261 - CSW01_00410 0.12 +0.9
76,267 + CSW01_00410 0.13 -0.1
76,272 + CSW01_00410 0.14 -3.1
76,275 - CSW01_00410 0.15 +0.2
76,275 - CSW01_00410 0.15 +0.7
76,316 - CSW01_00410 0.25 +0.3
76,344 + CSW01_00410 0.31 -3.7
76,362 - CSW01_00410 0.35 -0.3
76,385 + CSW01_00410 0.41 -2.6
76,410 - CSW01_00410 0.47 +1.1
76,491 + CSW01_00410 0.66 +0.3
76,491 + CSW01_00410 0.66 +1.3
76,494 + CSW01_00410 0.66 +0.9
76,496 + CSW01_00410 0.67 -3.3
76,499 - CSW01_00410 0.68 +1.0
76,499 - CSW01_00410 0.68 +0.1
76,501 + CSW01_00410 0.68 +0.9
76,501 + CSW01_00410 0.68 -2.0
76,501 + CSW01_00410 0.68 -0.1
76,502 - CSW01_00410 0.68 +0.5
76,502 - CSW01_00410 0.68 -0.7
76,502 - CSW01_00410 0.68 -3.2
76,506 + CSW01_00410 0.69 +1.2
76,509 - CSW01_00410 0.70 -0.7
76,509 - CSW01_00410 0.70 -2.0
76,511 + CSW01_00410 0.70 -0.3
76,519 - CSW01_00410 0.72 -0.7
76,519 - CSW01_00410 0.72 +0.4
76,523 - CSW01_00410 0.73 -0.1
76,559 - CSW01_00410 0.82 -1.7
76,592 - CSW01_00410 0.89 -1.1
76,600 - -2.9
76,603 + -0.8
76,659 + -0.6
76,659 + -0.3
76,659 + +1.4
76,659 + -3.4
76,659 + +1.8
76,659 + +0.4
76,667 - -0.3
76,669 + -1.8
76,669 + +2.5
76,669 + -0.2
76,669 + -0.3
76,669 + -0.3
76,674 + +0.2
76,674 + -3.3
76,674 + +1.6
76,674 + -4.4
76,677 - -0.0
76,677 - +1.0
76,677 - +1.1
76,680 - +0.1
76,682 - -0.0
76,682 - +2.3
76,682 - -2.7
76,724 + CSW01_00415 0.44 +0.6
76,724 + CSW01_00415 0.44 -0.5
76,756 + CSW01_00415 0.77 -2.9
76,897 + CSW01_00420 0.18 -0.6
76,923 - CSW01_00420 0.23 -0.5
76,931 - CSW01_00420 0.25 -2.7
76,976 - CSW01_00420 0.33 +0.5
77,006 + CSW01_00420 0.39 +1.7
77,049 + CSW01_00420 0.47 -1.8
77,129 + CSW01_00420 0.62 +0.1
77,130 - CSW01_00420 0.62 -1.1
77,137 - CSW01_00420 0.64 -3.1
77,146 + CSW01_00420 0.65 -0.7

Or see this region's nucleotide sequence