Experiment: Choline Lysine 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27415 and AO353_27420 are separated by 10 nucleotides AO353_27420 and AO353_27425 are separated by 158 nucleotides AO353_27425 and AO353_27430 are separated by 59 nucleotides AO353_27430 and AO353_27435 overlap by 4 nucleotides AO353_27435 and AO353_27440 are separated by 88 nucleotides
AO353_27415: AO353_27415 - hypothetical protein, at 5,988,726 to 5,989,316
_27415
AO353_27420: AO353_27420 - DNA-binding protein, at 5,989,327 to 5,989,608
_27420
AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084
_27425
AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563
_27430
AO353_27435: AO353_27435 - hypothetical protein, at 5,990,560 to 5,990,781
_27435
AO353_27440: AO353_27440 - hypothetical protein, at 5,990,870 to 5,991,106
_27440
Position (kb) 5989
5990
5991 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5988.798 kb on - strand, within AO353_27415 at 5988.798 kb on - strand, within AO353_27415 at 5988.882 kb on - strand, within AO353_27415 at 5989.182 kb on - strand, within AO353_27415 at 5989.182 kb on - strand, within AO353_27415 at 5989.454 kb on - strand, within AO353_27420 at 5989.454 kb on - strand, within AO353_27420 at 5989.454 kb on - strand, within AO353_27420 at 5989.481 kb on - strand, within AO353_27420 at 5989.505 kb on - strand, within AO353_27420 at 5989.505 kb on - strand, within AO353_27420 at 5989.524 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.760 kb on + strand at 5989.760 kb on + strand at 5989.761 kb on - strand at 5989.761 kb on - strand at 5989.855 kb on + strand, within AO353_27425 at 5989.855 kb on + strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.989 kb on + strand, within AO353_27425 at 5989.990 kb on - strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.082 kb on + strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.297 kb on - strand, within AO353_27430 at 5990.307 kb on + strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.504 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.663 kb on - strand, within AO353_27435 at 5990.748 kb on - strand, within AO353_27435 at 5990.807 kb on - strand at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.012 kb on + strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 12 mM remove 5,988,798 - AO353_27415 0.12 -1.9 5,988,798 - AO353_27415 0.12 -0.5 5,988,882 - AO353_27415 0.26 +0.9 5,989,182 - AO353_27415 0.77 +0.2 5,989,182 - AO353_27415 0.77 +0.7 5,989,454 - AO353_27420 0.45 +0.6 5,989,454 - AO353_27420 0.45 -0.9 5,989,454 - AO353_27420 0.45 -0.1 5,989,481 - AO353_27420 0.55 -1.5 5,989,505 - AO353_27420 0.63 +1.8 5,989,505 - AO353_27420 0.63 -0.3 5,989,524 - AO353_27420 0.70 +0.0 5,989,572 - AO353_27420 0.87 -0.5 5,989,572 - AO353_27420 0.87 -0.0 5,989,572 - AO353_27420 0.87 -1.1 5,989,572 - AO353_27420 0.87 -0.1 5,989,614 - -0.1 5,989,614 - -0.8 5,989,614 - -0.5 5,989,760 + -0.7 5,989,760 + +0.9 5,989,761 - +0.3 5,989,761 - +0.6 5,989,855 + AO353_27425 0.28 -0.1 5,989,855 + AO353_27425 0.28 +2.0 5,989,856 - AO353_27425 0.28 +0.1 5,989,856 - AO353_27425 0.28 +2.0 5,989,856 - AO353_27425 0.28 +0.2 5,989,856 - AO353_27425 0.28 +1.5 5,989,856 - AO353_27425 0.28 +1.0 5,989,887 + AO353_27425 0.38 +0.3 5,989,887 + AO353_27425 0.38 -0.1 5,989,888 - AO353_27425 0.38 +0.5 5,989,888 - AO353_27425 0.38 -0.0 5,989,888 - AO353_27425 0.38 +2.0 5,989,888 - AO353_27425 0.38 +1.5 5,989,888 - AO353_27425 0.38 +1.5 5,989,989 + AO353_27425 0.70 -0.1 5,989,990 - AO353_27425 0.70 +0.5 5,990,034 + AO353_27425 0.84 +0.9 5,990,034 + AO353_27425 0.84 +0.0 5,990,035 - AO353_27425 0.84 +1.2 5,990,035 - AO353_27425 0.84 +1.0 5,990,035 - AO353_27425 0.84 +0.5 5,990,082 + +0.8 5,990,083 - -0.5 5,990,083 - -1.5 5,990,083 - -0.2 5,990,296 + AO353_27430 0.36 +0.2 5,990,296 + AO353_27430 0.36 -0.5 5,990,296 + AO353_27430 0.36 +0.5 5,990,297 - AO353_27430 0.36 +1.9 5,990,307 + AO353_27430 0.39 -0.3 5,990,308 - AO353_27430 0.39 -1.1 5,990,308 - AO353_27430 0.39 -1.5 5,990,308 - AO353_27430 0.39 +1.0 5,990,503 + AO353_27430 0.85 +0.8 5,990,503 + AO353_27430 0.85 -1.5 5,990,504 - AO353_27430 0.86 +2.5 5,990,507 - AO353_27430 0.86 -0.5 5,990,507 - AO353_27430 0.86 +0.3 5,990,663 - AO353_27435 0.46 -0.4 5,990,748 - AO353_27435 0.85 +0.4 5,990,807 - +1.2 5,991,010 + AO353_27440 0.59 -2.5 5,991,010 + AO353_27440 0.59 -0.4 5,991,010 + AO353_27440 0.59 -0.2 5,991,010 + AO353_27440 0.59 -0.3 5,991,010 + AO353_27440 0.59 +2.3 5,991,010 + AO353_27440 0.59 -0.4 5,991,010 + AO353_27440 0.59 -0.2 5,991,011 - AO353_27440 0.59 -1.9 5,991,011 - AO353_27440 0.59 -2.1 5,991,011 - AO353_27440 0.59 +2.5 5,991,011 - AO353_27440 0.59 +0.6 5,991,011 - AO353_27440 0.59 -0.4 5,991,012 + AO353_27440 0.60 +0.0 5,991,013 - AO353_27440 0.60 +0.9 5,991,013 - AO353_27440 0.60 +0.9 5,991,013 - AO353_27440 0.60 -0.1
Or see this region's nucleotide sequence